Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 4e-13 >seq12 Length=6316961 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || ||||| || || || || || || ||||| || || | || || Sbjct 2154513 TCATCTCTGCTGATAAGCTCATTGGAGAACGTGAGCCCAGGCATGAGGCCCCTCTTCTTT 2154572 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || ||||||||||| ||||| || ||||| ||||| || || || ||||| || Sbjct 2154573 AGCCAGAAGATAGCAGCAAAAGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGGCC 2154632 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 2154633 ACCACTCTCTCACC 2154646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 12955 TTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCAT 13014 || || | |||| || || || | || ||||||||| ||||| || |||||||| ||||| Sbjct 2154127 TTGTTGAAACCC-AACTCCAGCATCAGTCTGTCAGCCACAAATTCAATGTACTGCTTCAT 2154185 Query 13015 TAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGC 13053 ||||||||||||||| || || | || ||||||| ||| Sbjct 2154186 TAAATCACAGTTCATGCCAATCAGCTTAACAGGCAAAGC 2154224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429493193920236