Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq30 168 2e-36 seq241 154 3e-32 seq2 89.7 1e-12 seq168 86.0 1e-11 >seq30 Length=4849498 Score = 168 bits (186), Expect = 2e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || ||||||||||| || || |||||| Sbjct 2502236 ATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCA 2502295 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || | ||| || |||||||| || || | |||||| ||||| Sbjct 2502296 GAGAGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGT 2502355 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| |||||||| || || ||||| || | ||| || || || || Sbjct 2502356 GGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 2502415 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||||||||| || || || ||||| |||||||| || Sbjct 2502416 ACCTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 2502468 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || |||||||||||||| || |||||| Sbjct 2501780 ATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCA 2501839 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || ||||||||||| || || | ||| || ||||| Sbjct 2501840 GAGAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGT 2501899 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| |||||||| || || ||||| || | ||| || || || || Sbjct 2501900 GGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 2501959 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 2501960 ACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || |||||||||||||| || |||||| Sbjct 2502008 ATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCA 2502067 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || ||||||||||| || || | ||| || ||||| Sbjct 2502068 GAAAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGT 2502127 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| |||||||| || || ||||| || | ||| || || || || Sbjct 2502128 GGAATACCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 2502187 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 2502188 ACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || || || || |||||||| || || | ||| ||| Sbjct 2501570 AGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCT 2501629 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| || ||||| || || || |||||||| Sbjct 2501630 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCT 2501689 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||| || || || || ||||| || ||||| ||| Sbjct 2501690 TGAATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 2501749 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || ||||| |||||||| Sbjct 2501750 TTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 >seq241 Length=1227248 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || || || | || || || || | || || || ||||| || || |||||||| Sbjct 301346 TCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 301287 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||| || | ||| ||||| || || || ||||| || || |||||||| || |||||||| Sbjct 301286 TAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 301227 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || |||||||| ||||| ||||| || || || || || | ||| ||||| || || || Sbjct 301226 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAAC 301167 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || ||||| ||||| || || || || || |||||||| Sbjct 301166 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq2 Length=9864463 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || ||||| || |||||||| || || || |||||||| |||||||| |||| ||||| Sbjct 2389574 GCATTTGCGGCAGTAGAAGGCATCTTTTTCTCGGGGTCATTTGCCGCCATCTACTGGTTA 2389633 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 ||||||||||| || ||||| ||| | || | ||| || || | || ||| | || || Sbjct 2389634 AAGAAAAGAGGTCTGATGCCCGGACTTACATACTCAAATGAGCTCATCAGCCGAGATGA 2389692 >seq168 Length=1764021 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||||| | |||| || ||| |||| ||||| || || | || ||||||||||| Sbjct 1748732 TGGTGGTATTTTGTCTCAAAGGGAGTAGAGTACCTGGACACAGTGTTTTTCATCCTACGT 1748673 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 ||||| || || || | || ||| | || || ||||| || | || ||||| || | Sbjct 1748672 AAGAAGTTCAACCATGTCAGCTTTTTGCACGTTTATCACCACTGCACCATGTTCACCCTC 1748613 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || || || ||| | || || ||||| Sbjct 1748612 TGGTGGATTGGCATCAAGTGGGTTGCCGGTGGACA 1748578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147215859676744