Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12 105 8e-18 seq58 98.7 1e-15 seq2 84.2 3e-11 >seq12 Length=6316961 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || ||||| |||||||| || ||||| ||||| | ||| | Sbjct 2154511 CCTCATCTCTGCTGATAAGCTCATTGGAGAACGTGAGCCCAGGCATGAGGCCCCTCTTCT 2154570 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | ||| || || ||||| || |||||||| || || |||||||||| Sbjct 2154571 TTAGCCAGAAGATAGCAGCAAAAGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGG 2154630 Query 33446 CAATAAGTCTCTCTCC 33461 | | | |||||| || Sbjct 2154631 CCACCACTCTCTCACC 2154646 >seq58 Length=3746050 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | || || || ||||| || ||||| ||||| || || | ||| || || | Sbjct 1795618 CACTGAAGACCTTCTTAGTCTCCTTATGCAGATTGGATACAGCGATGCGGGCTGCCAGGA 1795559 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||||||||| || |||| || || ||||| || | || || ||||||||||||| Sbjct 1795558 TGGCATAATCAGGGTGTTTAGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCA 1795499 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64128 ||| || || || || ||| | |||| || || || |||||||| | |||| Sbjct 1795498 GTTCAACAGTGGTCACACCACTGTATAGGCCCTGGATCACCTTCATTGTGATTT 1795445 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | ||||||||||| || || |||||||| || || || || ||| Sbjct 1796381 GTGCCTGCATTGAAGAGTGTAGGAGAAGCATGAGTGAACCATTTCTCTGACAGCAGGTTG 1796322 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||||||| || | | |||||| || ||| || || |||||||| | ||| | | Sbjct 1796321 TAGGTCTCAATGGCAGCAGCAATATCCTCTTTATGGATCCCAACTGCGACTCTCATCAGC 1796262 Query 63732 ATGTGCTGAGG 63742 ||||||||||| Sbjct 1796261 ATGTGCTGAGG 1796251 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/154 (74%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || ||||| ||||| || || || ||| ||| | || || || |||||||||| Sbjct 1800552 TCCAGCCATAAAAGTGCATGCTAGTGAGCTTGCCGTAATTGGGCTCGGCAATATGGATAT 1800493 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | || || ||||| || ||||| || || || || |||||||| || |||| | || Sbjct 1800492 TGAGGGACTGGCTTTGGTCAATGAAAGCCCCTCTATCAGCAGCCATCTTAATGACCACCT 1800433 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 62214 | || | ||| ||||| | ||| ||||| ||||| Sbjct 1800432 TCTGAGAAATCTCCCACACAGTCTTATACAACTC 1800399 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63274 |||| ||||| ||||||||||| ||||| ||||| ||| || || || || | || || Sbjct 1797427 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAACAGGTCCCTCGCCCTCTG 1797369 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || || || || ||||| || || |||||||| | | || ||| | ||||| || Sbjct 1797368 CTCTTCTTTACCAGTGTTCTTCTTCAGCTCGAGGAAGTCAAAGATGTCAAAGTGCCAAGG 1797309 Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| ||||| | ||||||| Sbjct 1797308 CTCCAGGTACATGGCAAATGCTCCAGG 1797282 >seq2 Length=9864463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||| || || || || || || | || ||||||||||| || || | || | Sbjct 2389694 CCTCATCTCGGCTGATGAGCTCATTTGAGTATGTAAGTCCGGGCATCAGACCTCTTTTCT 2389635 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| | |||| || ||||| || || || ||||| ||||||||||| ||||| | Sbjct 2389634 TTAACCAGTAGATGGCGGCAAATGACCCCGAGAAAAAGATGCCTTCTACTGCCGCAAATG 2389575 Query 33446 CAATAAGTCTCTCTCC 33461 | || |||||||| || Sbjct 2389574 CGATCAGTCTCTCCCC 2389559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739490696880