Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq241 91.5 1e-13 seq155987 89.7 5e-13 seq92 84.2 2e-11 >seq241 Length=1227248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | ||||| || | |||||| | || | || ||| Sbjct 300890 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 300949 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | ||||| ||||| ||||||||||| || ||||| || || Sbjct 300950 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCA 301009 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | || ||||| || || ||||||| | | | | | |||||| || Sbjct 301010 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 301069 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || || || || || |||| ||||| ||| | || || || || Sbjct 301070 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 301117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| | || | || ||| | Sbjct 301119 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 301178 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| ||||||||||| || ||||| || || Sbjct 301179 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 301238 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || ||||| || || ||||||| | | | | | ||||| ||| Sbjct 301239 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTACAAC 301298 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || || || || |||| ||||| ||| | || || || ||| Sbjct 301299 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGA 301346 >seq155987 Length=309 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| | || | || ||| | Sbjct 277 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 218 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| ||||||||||| || ||||| || || Sbjct 217 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 158 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || ||||| || || ||||||| | | | | | |||||| ||| Sbjct 157 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 98 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || |||| ||||| ||| | || || || || Sbjct 97 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 51 >seq92 Length=2735671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || ||||| | | | || ||||||||||||||||||||||| |||||||| Sbjct 2121672 GAGGGGAAGATGCACGGGTTCATGCGAATGTACTGGGCCAAAAAGATTCTGGAGTGGACC 2121613 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTAT-TCTATTTATCTAAACGATAGATACAGTCTCGA 71835 | |||||| |||| |||| ||| | ||||||| || || ||| || || Sbjct 2121612 TCGTCCCCCGAGGAGGCTCTCG-CTATCGCCGTTTATCTCAATGACCACTACGCGCTGGA 2121554 Query 71836 CGGTCGCGATCCTAACGGTTATGTCGGT 71863 ||| |||| || ||||| ||||| ||| Sbjct 2121553 CGGCTGCGACCCCAACGGATATGTAGGT 2121526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476966032420960