Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq30 134 1e-26 seq241 105 6e-18 seq155987 98.7 9e-16 >seq30 Length=4849498 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| ||||| ||||||| | || |||||| | | Sbjct 2502465 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAGT 2502406 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | || | ||| || ||||| || |||||||||||||| Sbjct 2502405 GACACCATTGAGAATGTCAAGGCCAAGATTCAA-GATAAAGAGGGCATTCCACCTGACCA 2502347 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| ||||| ||||| || |||| |||||| | || ||||| Sbjct 2502346 ACAGCGTCTGATCTTTGCTGGCAAGCAATTGGAGGATGGTCGCACCCTCTCTGACTACAA 2502287 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | || || | || |||||||| Sbjct 2502286 CATCCAGAAAGAATCCACTCTCCATCTTGTCCTGCGTCTCAGAGGAGG 2502239 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| ||||| ||||||| | || |||||| | | Sbjct 2502009 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2501950 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | || | ||| || ||||| || |||||||||||||| Sbjct 2501949 GACACCATTGAGAATGTCAAGGCCAAGATTCAA-GATAAAGAGGGCATTCCACCTGACCA 2501891 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || |||| ||||| | || ||||| Sbjct 2501890 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTCTCTGACTACAA 2501831 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||||||||| || ||| | || || | || |||||||| Sbjct 2501830 CATTCAGAAAGAATCCACTCTCCATCTTGTCCTGCGTCTCAGAGGAGG 2501783 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| ||||| ||||||| | || |||||| | | Sbjct 2502237 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2502178 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | || | ||| || ||||| || |||||||||||||| Sbjct 2502177 GACACCATTGAGAATGTCAAGGCCAAGATTCAA-GATAAAGAGGGTATTCCACCTGACCA 2502119 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || |||| ||||| | || ||||| Sbjct 2502118 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTTTCTGACTACAA 2502059 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||||||||| || ||| | || || | || |||||||| Sbjct 2502058 CATTCAGAAAGAATCCACTCTCCATCTTGTCCTGCGTCTCAGAGGAGG 2502011 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| ||||| |||| || | || |||||| | | Sbjct 2501781 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATTACCCTGGAGGTGGAGCCCAGT 2501722 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | || | ||| || ||||| || |||||||||||||| Sbjct 2501721 GACACCATTGAGAACGTCAAGGCCAAGATTCAA-GATAAAGAGGGCATTCCACCTGACCA 2501663 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| ||||| || | ||||||| ||| || | || ||||| Sbjct 2501662 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTTTCTGACTACAA 2501603 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||| | || || Sbjct 2501602 CATCCAAAAGGAGTCCACCCTCCATCTTGTTCT 2501570 >seq241 Length=1227248 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||||||| || || || ||||| | || || || ||||||| | || || ||| | Sbjct 300887 AACAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 300946 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | ||| || ||| ||||||||||| ||||| ||||| Sbjct 300947 AAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 301006 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || || ||||| || | ||||||| |||||| || ||| || Sbjct 301007 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTA 301066 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || ||||| || || | ||||| Sbjct 301067 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 301102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| | Sbjct 301119 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 301178 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| |||||||| Sbjct 301179 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 301238 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | ||||||| |||||| | || ||||| Sbjct 301239 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTACAAC 301298 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || || || ||||| || || | ||||| | || || || ||| Sbjct 301299 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGA 301346 >seq155987 Length=309 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| | Sbjct 277 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 218 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| |||||||| Sbjct 217 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 158 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | ||||||| |||||| || ||| ||||| Sbjct 157 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 98 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 97 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431830688991170