Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq82245 181 2e-40 seq241 179 7e-40 seq155987 178 2e-39 seq30 154 3e-32 seq202961 136 7e-27 seq49 89.7 9e-13 seq12 87.8 3e-12 >seq82245 Length=399 Score = 181 bits (200), Expect = 2e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || ||||| || || | Sbjct 319 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 260 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || ||||| || |||||||||||| Sbjct 259 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 200 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| || || || || | |||| Sbjct 199 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 140 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 139 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq241 Length=1227248 Score = 179 bits (198), Expect = 7e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || ||||| || || | Sbjct 301108 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 301049 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || ||||| || ||||||||||| Sbjct 301048 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 300989 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| || || || || | |||| Sbjct 300988 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTG 300929 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || ||||||||||| ||||| ||||||||| Sbjct 300928 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 300890 Score = 176 bits (194), Expect = 8e-39 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | ||| || | || |||| |||| ||| || |||||||| || |||||||| | Sbjct 301353 TTTACTGTCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 301294 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || || | |||||||| | |||||| || ||||| || || || || |||| Sbjct 301293 AGTCAGATAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGT 301234 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || ||||||||||| ||||| || ||||| ||||| ||| ||| |||||||| || Sbjct 301233 CAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTG 301174 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||| || || ||||||||||| ||||| |||||||| Sbjct 301173 GCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq155987 Length=309 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || ||||| || || | Sbjct 60 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 119 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || ||||| || ||||||||||| Sbjct 120 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 179 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| || || || || | |||| Sbjct 180 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 239 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 240 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 >seq30 Length=4849498 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || || || |||| || | || || |||||||| ||||||||||| || || Sbjct 2501552 TTGCCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCA 2501611 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | |||||||| | |||||| || || || || || | || ||||| ||| Sbjct 2501612 GAAAGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGT 2501671 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 |||||||| || || ||||||||||| ||||||||| ||| |||||||| | || Sbjct 2501672 GGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCC 2501731 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| ||| ||||| || || || || ||||| || || |||||||| Sbjct 2501732 ACCTCCAGGGTAATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| ||||| |||||||| || || ||| Sbjct 2502239 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2502298 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || || ||||| || || || || || | |||||||| |||||| Sbjct 2502299 AGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGA 2502358 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || || ||||||||||| |||||||| ||| |||||||| | || || Sbjct 2502359 ATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 2502418 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || || ||||| || || |||||||| Sbjct 2502419 TCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502465 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| ||||| || ||||| || || ||| Sbjct 2501783 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAG 2501842 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | || ||||| |||||| Sbjct 2501843 AGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2501902 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || || ||||||||||| |||||||| ||| |||||||| | || || Sbjct 2501903 ATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 2501962 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || || ||||| || || |||||||| Sbjct 2501963 TCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| ||||| || ||||| || || || Sbjct 2502011 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAA 2502070 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | || ||||| |||||| Sbjct 2502071 AGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2502130 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || ||||||||||| |||||||| ||| |||||||| | || || Sbjct 2502131 ATACCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 2502190 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || || ||||| || || |||||||| Sbjct 2502191 TCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 >seq202961 Length=268 Score = 136 bits (150), Expect = 7e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || ||||| || ||||||||||| Sbjct 259 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 200 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| || || || || | |||| Sbjct 199 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 140 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 139 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq49 Length=4080560 Score = 89.7 bits (98), Expect = 9e-13 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 ||||||||||| |||||||| ||||| || |||||||||||| |||| || || || Sbjct 1699002 CCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTC-GCTGGGCTCCACCTC 1698944 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 | |||||||||||| || || | || || ||||| ||||||||| |||| Sbjct 1698943 AAGGGTGATGGTTTTCCCGGTCAACGTTTTCACGAAGATCTGCATTTTGCT 1698893 >seq12 Length=6316961 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 9892 TTTAGAAGTCTGCGTCAATTGCAAACACGTTGTC-GTCGG--CATTCATGACGCCCGCCT 9948 |||||||||| || |||| || |||||| || || || |||||| ||| | Sbjct 2152886 TTTAGAAGTCCGCATCAAGCCTGAAGGTGTTGTCTGTGGGTCCAGACATGACCCCCATCC 2152945 Query 9949 TCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCT 10008 |||||||||| ||| || ||| |||||||||| || ||||| | ||||||| | Sbjct 2152946 TCTGGTACTCTCCTACTCGCTTCTCAAAGAAGTTGGTTTTCCCCTCCAAGGAAATGTTTT 2153005 Query 10009 CCATGAAGTCAAAGGGGTTCTC 10030 |||||||||||||||||||||| Sbjct 2153006 CCATGAAGTCAAAGGGGTTCTC 2153027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918356193254960