Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq155987 105 6e-18 seq241 104 2e-17 seq30 104 2e-17 seq82245 100 2e-16 seq202961 91.5 1e-13 >seq155987 Length=309 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| || || || ||| Sbjct 81 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 140 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| |||||||||||||||||||| ||||| || Sbjct 141 GCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 200 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | || || || | ||| | || ||||| || || || Sbjct 201 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 260 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 261 TTCACGAAGATCTGCATG 278 >seq241 Length=1227248 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| || || || ||| Sbjct 301087 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 301028 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| |||||||||||||||||||| ||||| || Sbjct 301027 GCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTG 300968 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | ||| | || ||||| || || || Sbjct 300967 ACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 300908 Query 114366 TTTACAAAAATCTGCATGGCTTAAT 114390 || || || |||||||| | ||||| Sbjct 300907 TTCACGAAGATCTGCATTGTTTAAT 300883 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || ||| |||||| || || || ||| Sbjct 301315 GTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGACCATCTTCCAGCTGCTTGCCA 301256 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| |||||||||||||||||||| ||||| || Sbjct 301255 GCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 301196 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | || || || | ||| | || ||||| || || || Sbjct 301195 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 301136 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 301135 TTCACGAAGATCTGCATG 301118 >seq30 Length=4849498 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || |||||||| ||||||||||| || Sbjct 2501780 ATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCA 2501839 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || ||||| |||| |||||||| ||||| || Sbjct 2501840 GAGAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGT 2501899 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| ||||| || |||||| || | | |||| |||||| ||| || Sbjct 2501900 GGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 2501959 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || ||||| || || ||||| |||||||| Sbjct 2501960 ACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || |||||||| || |||||||| || Sbjct 2502236 ATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCA 2502295 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| || | ||| || ||||| |||| |||||||||||||| || Sbjct 2502296 GAGAGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGT 2502355 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| ||||| || |||||| || | | |||| |||||| ||| || Sbjct 2502356 GGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 2502415 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || ||||| || || ||||| |||||||| Sbjct 2502416 ACCTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502465 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || |||||||| ||||||||||| || Sbjct 2502008 ATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCA 2502067 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || ||||| |||| |||||||| ||||| || Sbjct 2502068 GAAAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGT 2502127 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || ||||| || |||||| || | | |||| |||||| ||| || Sbjct 2502128 GGAATACCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 2502187 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || ||||| || || ||||| |||||||| Sbjct 2502188 ACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 >seq82245 Length=399 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| || || || ||| Sbjct 298 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 239 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| |||||||||||||| ||||| ||||| || Sbjct 238 GCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 179 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | || || || | ||| | || ||||| || || || Sbjct 178 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 119 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 118 TTCACGAAGATCTGCATG 101 >seq202961 Length=268 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 || ||| |||||| || || || |||||| |||| || | ||| ||||| ||||||||| Sbjct 265 GTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATG 206 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||||||||| ||||| || | | |||| ||||||| | | || || || Sbjct 205 CCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCA 146 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | ||| | || ||||| || || || || || || ||||||||| Sbjct 145 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418682677835016