Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq58 123 5e-23 seq2 91.5 3e-13 seq12 87.8 3e-12 >seq58 Length=3746050 Score = 123 bits (136), Expect = 5e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || ||||||||||| || | ||| |||||||| | ||||||| Sbjct 1797427 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAGGTCCCTCGCCCTCTGC 1797368 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || |||||||||||| ||||||| | |||||||||| ||| | |||||| ||| Sbjct 1797367 TCTTCTTTACCAGTGTTCTTCTTCAGCTCGAGGAAGTCAAAGATGTCAAAGTGCCAAGGC 1797308 Query 245123 TCCATGTA 245130 |||| ||| Sbjct 1797307 TCCAGGTA 1797300 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| ||||| || | ||| ||||| ||||||| || ||||||||| Sbjct 1799261 ACCTGAAACTCTCCAGACAGTACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATG 1799202 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| ||||| |||||||| | || || ||| Sbjct 1799201 GACTCATTGTTGCCCAGAATCTGTGCTGTGGAAGCAGTAGGCATGGGTGCCAGTAGTAGA 1799142 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||| || || ||||| Sbjct 1799141 CTGTTCCGTACACCATGCCT 1799122 >seq2 Length=9864463 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| ||| | || ||| | || || || |||||||| |||||||| | || ||| Sbjct 2389559 GGGGAGAGACTGATCGCATTTGCGGCAGTAGAAGGCATCTTTTTCTCGGGGTCATTTGCC 2389618 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||| | ||| | | |||| | |||||||||||| || | ||| || || || Sbjct 2389619 GCCATCTACTGGTTAAAGAAAAGAGGTCT-GATGCCCGGACTTACATACTCAAATGAGCT 2389677 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||| | || |||| Sbjct 2389678 CATCAGCCGAGATGAGG 2389694 >seq12 Length=6316961 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || ||||| ||||| ||||| || | || || Sbjct 2154646 GGTGAGAGAGTGGTGGCCTTTGCTGCTGTGGAGGGAATCTTTTTCTCTGGTTCTTTTGCT 2154587 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | ||||||||||| ||| ||| || ||||| || ||||| ||||| || || || Sbjct 2154586 GCTATCTTCTGGCTAAAGAAGAGGGGCCTCATGCCTGGGCTCACGTTCTCCAATGAGCTT 2154527 Query 42816 ATCAGCAGGGACGAGG 42831 |||||||| || |||| Sbjct 2154526 ATCAGCAGAGATGAGG 2154511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940992485483680