Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq3665 107 8e-19 seq3597 95.1 5e-15 >seq3665 Length=4900 Score = 107 bits (118), Expect = 8e-19 Identities = 227/330 (69%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 15342 GCGATGA---TCCCGTTACCTTCCGGGACCAAAATTTGGCTGGTTGCCGGTATCACCGAT 15398 ||||||| ||||| | || ||||| ||| | ||||||||| |||| ||||| Sbjct 1120 GCGATGACCATCCCGATCCCCTCCGGCACCCAGGTTTGGCTGGCGACCGGCCATACCGAC 1179 Query 15399 ATGAGAAATGGCTTCAACGGCCTGGCTGCGAAAGTACAAACGGCGCTGAAAGACGATCC- 15457 ||| | || |||||| |||| ||||| | || || | | |||| |||||| Sbjct 1180 ATGCGCAAGGGCTTCGACGGTCTGGCGCTGCTGGTCCAGGAGACCTTGAAGCGCGATCCG 1239 Query 15458 CATGTCCGGCCATGTTTTCATTTTCCGGGGCCGCAGCGGCAGTCAGGTTAAACTGCTGTG 15517 |||| | |||||| | || | ||||| |||||||||||| | | | | || ||||||| Sbjct 1240 CATGGC-GGCCATCTGTTTGTGTTCCGCGGCCGCAGCGGCGGCCTGATCAAGGTGCTGTG 1298 Query 15518 GTCCACCGGTGACGGACTGTGCCTCCTGACCAAACGGCTGGAGCGTGGGCGCTTCGCCTG 15577 | | ||| | || ||||||| | || ||||||||||| || |||||| ||| Sbjct 1299 GCACGACGGCCAGGGCATGTGCCTGTCCGCGAAGCGGCTGGAGCGCGGCCGCTTCATCTG 1358 Query 15578 GCCGTCAGCCCGT-GATGGCAAAGTGTTCCTTACGCAGGCGCAGCT-GGCGATGCTGCTG 15635 ||| ||| | || || || ||| | |||| ||| || || ||| || |||| Sbjct 1359 GCC-ACAGGCTGTGGACGGAGCGGTGACGATAACGCCGGCCCAACTCGGCTAT-CTGCGT 1416 Query 15636 GAAGGTATCGACTGGCGACAGCCTAAGCGG 15665 ||||| ||||||||||| || || ||||| Sbjct 1417 GAAGGCATCGACTGGCGGCATCCGCAGCGG 1446 >seq3597 Length=5197 Score = 95.1 bits (104), Expect = 5e-15 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 15469 ATGTTTTCATTTTCCGGGGCCGCAGCGGCAGTCAGGTTAAACTGCTGTGGTCCACCGGTG 15528 || ||||| | || || ||| |||||| ||| | | || |||||||| | ||| Sbjct 2696 ATCTTTTCGTGTTTCGTGGCAAAAGCGGCGGTCTGATCAAGGTGCTGTGGCACGACGGCC 2755 Query 15529 ACGGACTGTGCCTCCTGACCAAACGGCTGGAGCGTGGGCGCTTCGCCTGGCCGTCAGCCC 15588 | || ||||||| | |||| ||||||||||| || |||||| |||||| || ||| Sbjct 2756 AGGGCATGTGCCTGTTCGCCAAGCGGCTGGAGCGCGGCCGCTTCATCTGGCCATC-GCCG 2814 Query 15589 GT-GATGGCAAAGTGTTCCTTACGCAGGCGCAGCT-GGCGATGCTGCTGGAAGGTATCGA 15646 || || || | ||| | |||| ||||||||| ||| || ||||| ||||| ||||| Sbjct 2815 GTGGACGGAACGGTGGCGATCACGCCGGCGCAGCTCGGCTAT-CTGCTCGAAGGCATCGA 2873 Query 15647 CTGGCGACAGCCTAAGCG 15664 |||||| || || |||| Sbjct 2874 CTGGCGTCATCCACAGCG 2891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198079657260444