Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 3e-15 >seq30 Length=4849498 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || || ||||| || || ||||| || ||||| || || || Sbjct 2502236 ATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCA 2502295 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| |||||||| || || || | |||| || || ||||| || Sbjct 2502296 GAGAGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGT 2502355 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| |||||||||||||| || |||| || | |||||| | ||| Sbjct 2502356 GGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 2502415 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | || || || || || || || ||||| || |||||| Sbjct 2502416 ACCTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATC 2502466 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || || ||||| || || || ||||||||||| || || || Sbjct 2501555 CCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 2501614 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || || || || | |||| || |||||||| || ||| Sbjct 2501615 AGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2501674 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| |||||||||||||| || |||| || | || | |||||| | ||| || Sbjct 2501675 ATGCCCTCTTTATCTTGAATCTTGGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCAC 2501733 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| || || || || || || || ||||| || ||||| Sbjct 2501734 CTCCAGGGTAATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || || ||||| || || ||||| || || || || || || Sbjct 2501780 ATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCA 2501839 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || ||||| || | |||| || |||||||| || Sbjct 2501840 GAGAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGT 2501899 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| |||||||||||||| || |||| || | |||||| | ||| Sbjct 2501900 GGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 2501959 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || || || || || ||||| || ||||| Sbjct 2501960 ACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450401311959280