Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq472 154 2e-32 seq99 118 2e-21 >seq472 Length=505873 Score = 154 bits (170), Expect = 2e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || || | |||||| ||||||||||| ||||||||| | Sbjct 210115 GCGGTGTTGACGATGTCGAAGCCAACTTTCCCGCCAAAGGTGCTGGGCTTCCAGTACTCA 210174 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| |||| || ||||||| || | ||||| |||| || | Sbjct 210175 GGGGAGCAGATGGGGTTTCCCATAAGACCTTTCAGCGAGTATGGAGCACCCATTTCCACC 210234 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| | || || |||||||| | || || || || |||| | ||| ||||||||| Sbjct 210235 ATGGTTTCTCCAAAGATGGCGTTCGTCCGGGGCTTCTCAACGAGCAGGCCGGTGTAGAGT 210294 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || || || || || || || | | |||| ||| || || ||||||||||||||| Sbjct 210295 TCCACGGCGTCAACATCTCCGTACATCTCCTCCAGCTCTGCCGCCATCTCCTTCTCACCT 210354 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 9547 AAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGG 9606 || ||||| |||| || | |||||| |||||||||| |||||||| | | || || Sbjct 211655 AAGTCATCGGGCATGAGTGGGTGCCAGTGGTAGAGGGTGTTGAACTCCGAGGAAATCCGA 211714 Query 9607 TTCTGGTACT-GAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTG 9665 |||||||||| |||| || || ||| || | || ||| || || | || | ||||| Sbjct 211715 TTCTGGTACTGGAAACGC-TCACTGAAGAGGAGCTGCGGATCGAATTTGAGTTTGAAGTA 211773 Query 9666 GTACCCGCTGAGTTGCTGGACATA 9689 ||| |||||||| ||||| ||||| Sbjct 211774 GTAGCCGCTGAGGTGCTGCACATA 211797 >seq99 Length=2640589 Score = 118 bits (130), Expect = 2e-21 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||| | || |||||||| || || || | ||| || || |||||||| |||||||| | Sbjct 730909 GCGCTGTTGACGATGTCAAATCCCACTTTCCCACCAAAAGTGCTGGGCATCCAGTACTCA 730968 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| |||| |||| || ||||||| |||||| || || |||| ||| | Sbjct 730969 GGGGAGCAGATGGGGTTCCCCATCAGGCCTTTCAGGGAAAAGGGGGCGCCCATCTCCACC 731028 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || || | ||| ||| | || || || || | | |||| |||||| Sbjct 731029 ATGGTCTCTCCAAACACGGCGTTGGGCCTGGGCTTCTCCACCAGCAGCCCAGAGTAGAGC 731088 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || | || | ||| || || || |||| ||| || || | | || |||||| Sbjct 731089 TCCACGGATTCTATGTCTCCGTACAGTTTCTCCATCTCCGCTGCAAGTACTTTATCACCT 731148 Query 9176 ACAAG 9180 | ||| Sbjct 731149 AGAAG 731153 Score = 105 bits (116), Expect = 1e-17 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | ||||||| |||| || ||||| || | || | Sbjct 733371 ATGAGCCGCGTGGTCTGGAAGATGCGCTCGTCGTCCCAGTCTGGGTGCTCCCGCTTCATC 733430 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || || ||||| | |||||| || |||||||| | |||||||||||||| | || || Sbjct 733431 ACGTCACAGACACGGTTGTGCTCCCTCAGCCAGAGCGTGGCGTACATCATGAGGCCAGGA 733490 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||| |||| | ||||| |||||||| | || || || | | || | Sbjct 733491 ACCAGGCCGAACGCTTCGTGACCCACAGCAAAGCGGTGTTCCTCCGGGGCATGAGGAGGG 733550 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || |||| | |||||| ||||| || |||||| |||| || ||||| | |||| Sbjct 733551 TAATGCATGTCCACCTGAACATCTTTCACCAGGGGGGGGTACACCTCGCCGTCCACAACC 733610 Query 9967 TGA 9969 ||| Sbjct 733611 TGA 733613 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| | |||||| |||| | || |||||||| || || || |||||||| Sbjct 732095 TCGGGCATCAGTGGGTGCCAGTGGTACAACGTGTTGAACTCAGCGGCAATGCGGTTCTGA 732154 Query 9613 TACTGAAAGGC--GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| ||| ||| || | |||||||||||| | |||| ||||||||| | Sbjct 732155 TACTGAAACCTCTGGTT--GAAGAGGAGCTCCGGGTCAAACTTCAGCTTGAAGTGGTAGC 732212 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| || |||||||| || Sbjct 732213 CGCTCAGGTGCTGGACGTA 732231 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 9964 ACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGTT 10023 |||||||| |||||||| ||||| || || || | |||||| ||||||||||||| | Sbjct 734022 ACCTGATATTTCATCTTTCCATCTTTAAAAAGTCTCAGCTTGTGCTGCTTCTCCAGATTC 734081 Query 10024 TCGCCGTAGATGTGACTGAGATCGACCTG 10052 ||||| || |||||||| | ||| ||||| Sbjct 734082 TCGCCATAAATGTGACTCAAATCCACCTG 734110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721163126061200