Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq155987 149 6e-31 seq82245 145 8e-30 seq241 145 8e-30 seq30 114 1e-20 >seq155987 Length=309 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | | | Sbjct 277 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 218 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || ||||| | ||||| Sbjct 217 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCA 159 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 158 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 99 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || ||||||||||| | || |||||| Sbjct 98 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGC 50 >seq82245 Length=399 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | | | Sbjct 102 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 161 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | ||||| Sbjct 162 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 220 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 221 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 280 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || ||||||||||| | || |||||| Sbjct 281 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGC 329 >seq241 Length=1227248 Score = 145 bits (160), Expect = 8e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 ||| |||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| Sbjct 300886 AAACAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGC 300945 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | |||| | | | | | || | || |||| |||||||| || ||||| | | Sbjct 300946 CAAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTG 301005 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | ||| ||||| |||||||| || | |||||||| ||||| Sbjct 301006 ACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACT 301065 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | || || || ||||||||||| | || |||||| Sbjct 301066 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGC 301118 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | | | Sbjct 301119 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 301178 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || ||||| | ||||| Sbjct 301179 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCA 301237 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | |||||||| |||||||| Sbjct 301238 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTACAA 301297 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || ||||||||||| | || ||||| Sbjct 301298 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 301345 >seq30 Length=4849498 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || ||||| || || || |||||||| | || || ||| | Sbjct 2502469 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACTCTGGAGGTGGAGCC 2502410 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || || | || |||||||| ||||| | || Sbjct 2502409 CAGTGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGA 2502350 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| || || | || ||||| || |||| || | ||||||||| ||||| Sbjct 2502349 CCAACAGCGTCTGATCTTTGCTGGCAAGCAATTGGAGGATGGTCGCACCCTCTCTGACTA 2502290 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || ||| | || || ||| | || |||||| | ||||| || Sbjct 2502289 CAACATCCAGAAAGAATCCACTCTCCATCTTGTCCTGCGTCTCAGAGGAGG 2502239 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || || || ||||||||| | || || ||| ||| Sbjct 2502009 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2501950 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | || |||||||| ||||| | ||||| Sbjct 2501949 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCAG 2501890 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| || | ||||||||| ||||||||| Sbjct 2501889 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTCTCTGACTACAAC 2501830 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || ||| | || |||||| | ||||| || Sbjct 2501829 ATTCAGAAAGAATCCACTCTCCATCTTGTCCTGCGTCTCAGAGGAGG 2501783 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || || || ||||| ||| | || || ||| ||| Sbjct 2501781 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATTACCCTGGAGGTGGAGCCCAGT 2501722 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | || |||||||| ||||| | ||||| Sbjct 2501721 GACACCATTGAGAACG-TCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCA 2501663 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| || | || ||||| |||||||| Sbjct 2501662 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTTTCTGACTACAA 2501603 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||| | || |||||| Sbjct 2501602 CATCCAAAAGGAGTCCACCCTCCATCTTGTTCTGCGT 2501566 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || || || ||||||||| | || || ||| ||| Sbjct 2502237 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2502178 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | || |||||||| ||||| | ||||| Sbjct 2502177 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGTATTCCACCTGACCAG 2502118 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| || | |||||||| ||||||||| Sbjct 2502117 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 2502058 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || ||| | || |||||| | ||||| || Sbjct 2502057 ATTCAGAAAGAATCCACTCTCCATCTTGTCCTGCGTCTCAGAGGAGG 2502011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498400200101120