Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq30 158 3e-33 seq241 154 3e-32 seq155987 149 1e-30 seq82245 143 6e-29 seq202961 116 8e-21 >seq30 Length=4849498 Score = 158 bits (174), Expect = 3e-33 Identities = 169/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | || |||||| || || |||||||| ||||| || ||||| || | ||| || | Sbjct 2501563 GAGACGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACG 2501622 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || || ||||| || || || ||||| || |||||||| || Sbjct 2501623 ACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTC 2501682 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 ||| |||||||| || ||||||||||||||||||||| ||| ||||| || || Sbjct 2501683 TTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAG 2501739 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || |||| || || || || | ||||| Sbjct 2501740 GGTAATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || ||||| || |||||||| ||||| ||||| ||||| || | || || Sbjct 2501788 TCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGGGT 2501847 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || || ||||| || || || ||||| || |||||||| Sbjct 2501848 GCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCC 2501907 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||| |||||||| || |||||| |||||||||||||| ||| ||||| || Sbjct 2501908 CTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 2501964 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 2501965 CAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || ||||| || |||||||| ||||| ||||| ||||| || | ||| || Sbjct 2502016 TCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGT 2502075 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || || ||||| || || || ||||| || ||||| || Sbjct 2502076 GCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATACC 2502135 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||| |||||||| || |||||| |||||||||||||| ||| ||||| || Sbjct 2502136 CTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 2502192 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 2502193 CAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || ||||| || |||||||| ||||| || || ||||| || | || || Sbjct 2502244 TCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGT 2502303 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | ||||| || || ||||| || || |||||||| || |||||||| Sbjct 2502304 GCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGAATGCC 2502363 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||| |||||||| || |||||| |||||||||||||| ||| ||||| || Sbjct 2502364 CTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 2502420 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| || || || || | ||||| Sbjct 2502421 CAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502465 >seq241 Length=1227248 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || |||||||| || || || ||||| |||| || || Sbjct 301111 CTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 301052 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || |||||||| || | || ||||| |||||||||||| Sbjct 301051 CGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCT 300992 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 |||||||| || || || |||||| |||||||||||||| |||| || || ||| Sbjct 300991 TCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTTGGCTCAACCTCA 300935 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| || || | || || ||||| | |||||| Sbjct 300934 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 300890 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || |||||||| || || || ||||| || | || || Sbjct 301339 CTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTG 301280 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || |||||||| || | || ||||| |||||||||||| Sbjct 301279 CGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCT 301220 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 |||||||| || || || ||| ||||||||||||||||| ||| || || ||| Sbjct 301219 TCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCA 301163 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || ||||| | ||||| Sbjct 301162 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq155987 Length=309 Score = 149 bits (164), Expect = 1e-30 Identities = 168/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || |||||||| || || || ||||| |||| || || Sbjct 57 CTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 116 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || |||||||| || | || ||||| |||||||||||| Sbjct 117 CGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCT 176 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 |||||||| || || || ||| ||||||||||||||||| ||| || || ||| Sbjct 177 TCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCA 233 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || ||||| | ||||| Sbjct 234 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 >seq82245 Length=399 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || |||||||| || || || ||||| |||| || || Sbjct 322 CTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 263 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || |||||||| || | || ||||| |||||||||||| Sbjct 262 CGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCT 203 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || ||||| || || || ||| ||||||||||||||||| ||| || || ||| Sbjct 202 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCA 146 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || ||||| | ||||| Sbjct 145 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq202961 Length=268 Score = 116 bits (128), Expect = 8e-21 Identities = 123/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || |||||||| || | || ||||| ||||||||||||||| Sbjct 259 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 200 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 ||||| || || || ||| ||||||||||||||||| ||| || || |||||| Sbjct 199 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCAAGG 143 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | || || ||||| | ||||| Sbjct 142 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105451325570306