Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq30 134 9e-27 seq241 96.9 2e-15 seq82245 95.1 8e-15 seq155987 89.7 3e-13 >seq30 Length=4849498 Score = 134 bits (148), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| ||||| |||||| | ||| |||| |||||||| ||||| ||||| Sbjct 2502046 TTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAA 2502105 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||| || || |||||| ||||| | Sbjct 2502106 GATCAGACGCTGCTGGTCAGGTGGAATACCCTCTTTATCTTGAATCTTGGCCTTGAC--A 2502163 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || || |||||| Sbjct 2502164 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTC 2502223 Query 34968 ACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 2502224 ACAAAGATCTGCATA 2502238 Score = 131 bits (144), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| ||||| || ||| | ||| |||| |||||||| ||||| ||||| Sbjct 2501818 TTCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAA 2501877 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||| || || |||||| ||||| | Sbjct 2501878 GATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGAC--A 2501935 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || || |||||| Sbjct 2501936 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTC 2501995 Query 34968 ACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 2501996 ACAAAGATCTGCATA 2502010 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| |||||| | || |||| |||||||| || || ||||| Sbjct 2501591 TCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAG 2501650 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||| || || |||||| |||||| Sbjct 2501651 ATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACGTTC 2501710 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||||||| Sbjct 2501711 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTACCAGTCAGCGTCTTCACA 2501770 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 2501771 AAGATCTGCATA 2501782 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||| || || || ||||| Sbjct 2502274 TTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAA 2502333 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || ||||| | || | ||||| || || |||||| ||||| | Sbjct 2502334 GATCAGACGCTGTTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGAC--A 2502391 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | || ||||| || || || || |||||| Sbjct 2502392 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTC 2502451 Query 34968 ACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 2502452 ACAAAGATCTGCATCTT 2502468 >seq241 Length=1227248 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 301117 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301058 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || || || || || | |||||||| | || Sbjct 301057 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 300998 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| ||||| ||||| || || || | |||| | ||||| Sbjct 300997 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTTGGCTCAA 300940 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || ||||| |||||||| ||||||||||| Sbjct 300939 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 300891 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||| ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 301346 TCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 301287 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | || |||| |||||||| || || || || || || | |||||||| | || Sbjct 301286 TAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 301227 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || ||||| ||||| || ||| | || | || | | |||||| Sbjct 301226 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAAC 301167 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || ||||| |||||||| ||||||||||| Sbjct 301166 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq82245 Length=399 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 328 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 269 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || || || || || | |||||||| | || Sbjct 268 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 209 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || ||| | || | || | | |||||| Sbjct 208 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 149 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || ||||| |||||||| ||||||||||| Sbjct 148 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq155987 Length=309 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 51 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 110 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || || || || || | |||||||| | || Sbjct 111 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 170 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || ||| | || | || | | |||||| Sbjct 171 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 230 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || ||||| |||||||| ||||||||||| Sbjct 231 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323511868971504