Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 5e-14 seq58 87.8 2e-12 >seq2 Length=9864463 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| || || | ||||| || |||| | || |||||||| |||||||| | Sbjct 2389694 CCTCATCTCGGCTGATGAGCTCATTTGAGTATGTAAGTCCGGGCATCAGACCTCTTTTCT 2389635 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||| | || | |||||||| || || || || || ||||||||||| ||||| | Sbjct 2389634 TTAACCAGTAGATGGCGGCAAATGACCCCGAGAAAAAGATGCCTTCTACTGCCGCAAATG 2389575 Query 19103 CAACTAGTCTTTCTCC 19118 | | ||||| || || Sbjct 2389574 CGATCAGTCTCTCCCC 2389559 >seq58 Length=3746050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| || ||||| ||||| | || ||| | || || | |||||| |||| Sbjct 1800552 TCCAGCCATAAAAGTGCATGCTAGTGAGCTTGCCGTAATTGGGCTCGGCAATATGGATAT 1800493 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || || || ||||| || || ||||||||||| ||||| | | | ||| Sbjct 1800492 TGAGGGACTGGCTTTGGTCAATGAAAGCCCCTCTATCAGCAGCCATCTTAATGACCACCT 1800433 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | || | |||||||| || || ||||| | | ||| | ||| ||||||| Sbjct 1800432 TCTGAGAAATCTCCCACACAGTCTTATACAACTCTTTCAGGTCATCTGGGA 1800382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560116700465520