Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq652 116 3e-21 >seq652 Length=327282 Score = 116 bits (128), Expect = 3e-21 Identities = 129/171 (75%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| | ||||| || || || || ||||||||||| ||||| || || || || || Sbjct 262372 CATGTCTTTATACTCAGCACCAAAGTGTCTCCACTGGAAACCGTATACAGGGCCTAGATC 262313 Query 30210 TCCCTCTTCCCTGTGCTCG---AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30266 |||||| || | |||| || || ||||| |||| ||||| | || ||||| || Sbjct 262312 TCCCTCCTCAC---GCTCAGTAAATCCACTCTTATCCAGGAAGTCCCGTGAGCCGTTCGC 262256 Query 30267 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 ||||||||||| || || ||||| || |||||||||| |||||| || || Sbjct 262255 ATCCCAGATCTTCACACCTTTCTCTGAAAGCTCTTTGGCGTTTGTTGAACC 262205 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | |||||||||||||| ||||| Sbjct 263199 AGTCCTGTGATGTGGGCGATCATGTAGGTCAGTAGGGCATAGCTGGCGATGTTGAAGGGC 263140 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || || || || || || | |||||| | ||| || || || || || || | Sbjct 263139 ACACCCAGACCGATATCTCCTGAACGCTGGTATAACTGGCATGACAGTTCGCCCTCAGAC 263080 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | | ||||| || ||||||||||| || Sbjct 263079 ACATAGAACTGGCATAGAGCATGGCAGGGTGGAAGAGCCATCAG 263036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407205672705014