Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq396 194 3e-44 seq392 167 4e-36 seq297 140 6e-28 seq49 131 3e-25 seq14 127 4e-24 seq58 109 1e-18 >seq396 Length=633979 Score = 194 bits (214), Expect = 3e-44 Identities = 190/244 (78%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| || | ||| | ||||||| ||| ||||| ||||| ||||| |||| Sbjct 272405 GCTGGCAGCCGCTGCTGACGTGTCTGAGGACCTTCTGCTTGAGCTGGGCGACCTGCTCCC 272346 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || ||||| || |||| || || |||||||| |||||||||||||||||| | Sbjct 272345 GGAGGACCGACGCCGTGCTGGAGAGCCCCGCGTTGTCCGACTTGAGCACCTTCACTCGGT 272286 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| ||||||||||| ||||| || |||| || || |||||||| |||| ||||| Sbjct 272285 CCTCCAGACGCGCGATGCGCTCCAGCTTCCGCCTCCGACACTTGGTGGCGGCCAGGCGGT 272226 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC- 241627 ||| ||| | ||| || ||||||||||| |||||| |||| |||||| || ||| Sbjct 272225 TCCTGAGGCGCTTCCGCTCCGCCTTGATCTTCTCCTGGGTTTCCAGGTCGATGGGGGACA 272166 Query 241628 TTGG 241631 |||| Sbjct 272165 TTGG 272162 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/115 (78%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| ||||| ||||| ||| | ||||| || || ||||| || |||| || ||||||| Sbjct 272372 TCTGCTTGAGCTGGGCGACCTGCTCCCGGAGGACCGACGCCGTGCTGGAGAGCCCCGCGT 272313 Query 238986 TATCAGACTTGAGCA--TTC------TCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || |||||||||| ||| |||||||| ||||||||||| |||||||| Sbjct 272312 TGTCCGACTTGAGCACCTTCACTCGGTCCTCCAGACGCGCGATGCGCTCCAGCTT 272258 >seq392 Length=642779 Score = 167 bits (184), Expect = 4e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATT 241467 |||| || ||| | ||| ||||| || |||||||| || ||||| | || |||| | Sbjct 371471 GTGCGTCATGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGTGAGGCGGCGCT 371412 Query 241468 GGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCG 241527 || || || |||||||| ||||||||||||||||| || ||||||| |||| |||||| Sbjct 371411 CGAGAGCCCCGCGTTGTCGGACTTGAGCACCTTCACCTTGTCCTCCAAGCGCGAGATGCG 371352 Query 241528 TTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTC 241587 ||||| || || || ||||| |||||||| || | ||||| || || | ||| || || Sbjct 371351 CTCCAGCTTCCGTCGCCGGCACTTGGTGGCCGCGAGCCGGTTGCGCAGCCGCTTGCGCTC 371292 Query 241588 CGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617 |||||| || || || |||||||||||||| Sbjct 371291 CGCCTTCATCCGCTCTTGGTCCTCCATGTC 371262 >seq297 Length=987429 Score = 140 bits (154), Expect = 6e-28 Identities = 177/240 (74%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 241390 CTGACAGCC-TTGG-CACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCC 241447 ||| ||||| |||| |||||| || ||| | ||||||||| || |||||||| ||| Sbjct 34973 CTGGCAGCCATTGGTCACATGATTCAT--GACTTTCTGTTTGAGCTGCGCCACCTGCTCC 35030 Query 241448 CGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTC 241507 ||||| | | || || | ||| | | ||| | | ||| ||||||||||| ||| Sbjct 35031 CGCAGGATGCTGGCCGTGGACGCCAGGTCCGAGTTCTGCGCCTTCAGCACCTTCACCTTC 35090 Query 241508 TCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGG 241567 ||||||||||||| ||| || ||||| || | | |||||| |||| ||| || | |||| Sbjct 35091 TCCTCCAGCCGCGAGATCCGCTCCAGCTTCCTCTTGCGGCACTTGGAGGCCGCGATGCGG 35150 Query 241568 TTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| || |||| || || |||||||| | |||||| ||||| |||||| || ||| Sbjct 35151 TTCCTCAGCTTCTTCCGCTCGGCCTTGATCCTCTCCTGGGTCTCCAGGTCGATGGGCGAC 35210 >seq49 Length=4080560 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 |||||| ||| || || || |||||||| |||| ||| ||| || || | || Sbjct 1831259 AGGACCCTCTGCTTTAGCTGCGCCACCTGCTCCCTCAGCACGCTGGCCGTGGAAGCGAGC 1831200 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 ||| ||| | | ||| ||| |||||| || ||||| ||||||| |||||| |||||| Sbjct 1831199 TCTGTGTTCTGATTCTTCAGCGTCTTCACCTTGTCCTCGAGCCGCGAGATGCGCTCCAGT 1831140 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| || || | ||||| || || ||||| || ||||| ||| Sbjct 1831139 TTGCGCTTGCGGCACTTGGATGCGGCGATCCGGTTGCGCAGCCTCTTGCGCTCCGCTTTG 1831080 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||||| ||||||||||| || || Sbjct 1831079 ATGCGCTCCTGCGTGTCCATGTCGATTGGCGA 1831048 >seq14 Length=6034231 Score = 127 bits (140), Expect = 4e-24 Identities = 159/217 (73%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC-- 241471 || ||| | ||| ||||| ||||||||||| || ||||| | | || || |||| Sbjct 2819568 CATGACTTTCTGCTTGAGCTGGGCCACCTGCTCGCGCAGCATGTTGGCCGT---GGACGC 2819624 Query 241472 -AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 || | | ||| | ||||||||| |||||| || |||||||| |||| |||||| || Sbjct 2819625 GAGCTCCGAGTTCTGCGACTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGAGATGCGCTC 2819684 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 ||| || | | |||||| |||| || || | |||||| || | | ||| || || || Sbjct 2819685 CAGCTTCCTCTTGCGGCACTTGGACGCGGCGATGCGGTTACGCATGCGCTTGCGCTCGGC 2819744 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||| |||||| ||||||||| || || ||| Sbjct 2819745 CTTGATGCGCTCCTGGCTCTCCATGTCTATGGGCGAC 2819781 >seq58 Length=3746050 Score = 109 bits (120), Expect = 1e-18 Identities = 119/157 (76%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 213807 TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTC 213866 ||||| ||||||| |||||| || || |||| ||| || || |||||||||||| | | Sbjct 1797432 TCTCT-ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAGGTCCCTCGCC 1797374 Query 213867 CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGC 213926 ||| ||| || |||| ||| || ||| || || |||||||||||||| |||| Sbjct 1797373 CTCTGCTCTTCTTTACCAGTGTTCTTCTTCAGCTCGAGGAAGTCAAAGATGTCAAAGTGC 1797314 Query 213927 CACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 || ||||||| ||| |||||||| || || || |||| Sbjct 1797313 CAAGGCTCCAGGTACATGGCAAATGCTCCAGGTCTCT 1797277 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | ||| || ||||||||||||||| || ||| |||||||| ||||| ||| Sbjct 1798169 GTGTACTCTACGATTTCTGTGCACAGGTTGCTGGATTTGATAGTGCCCAGATTCTGCTGG 1798110 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || | ||| | | ||| | |||||| ||||||||||| || | || |||||| ||| Sbjct 1798109 TT-GCTTTTCCTATTGCAAGCATCCTTATAGAGCATGTAAGGAGTTCCAGTCTCTGTCTG 1798051 Query 213647 GGAC 213650 ||| Sbjct 1798050 AGAC 1798047 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||||| ||| ||||| |||||||||||||| ||| || || |||||| Sbjct 1799216 GTGTAGGGCTCGATGGACTCATTGTTGCCCAGAATCTGTGCTGTGGAAGCAGTAGGCATG 1799157 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 || |||| || |||||||||| || || ||| Sbjct 1799156 GGTGCCAGTAGTAGACTGTTCCGTACACCATGC 1799124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928231471045120