Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq140 131 2e-25 seq45 104 3e-17 >seq140 Length=1959537 Score = 131 bits (144), Expect = 2e-25 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760 ||||||| ||||||||| | || || || || || |||||| || || | || || Sbjct 1123665 AGGTCCCGCATGCAATTGAGGTCAGCTTGAACTCGAGACCAGGAGGCATAGATCACACTC 1123724 Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGA 160820 || ||||||||||||||||| ||||| || || |||||||| || || ||| Sbjct 1123725 TCCAGTTTACTGGCCACAAACACGTTGGGAAAGCATGACACGATAGCCTTTACAGCCTCC 1123784 Query 160821 AAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 ||| |||| | | ||| ||||||| || || || || | |||||||| | || Sbjct 1123785 TTGAAGATCTCAGGTGTCTTCAGGTCCACATGAACACAGTATACATTCTGAGGAGAATAA 1123844 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 ||||| | | | |||||| ||||| || ||||| | ||||||||| || ||||| || Sbjct 1123845 ATGGCTCGCAAGAGCCTCTCAAACATTTCAATCTTCTCATGGATCACCATGGAGTAAGCA 1123904 Query 160941 ATCGGAAACTCGGTCTCCTC 160960 || ||||| || ||||||| Sbjct 1123905 ATGGGAAAATCTCTCTCCTC 1123924 >seq45 Length=4121683 Score = 104 bits (114), Expect = 3e-17 Identities = 276/414 (67%), Gaps = 12/414 (3%) Strand=Plus/Plus Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 ||||||||||||||| | |||| ||| || | |||||| || ||||| || ||||| Sbjct 3252796 GTGTCGCTTCTTCCATCGGACCTCCTTATGAGCAGGCATGGACTCGGTCTCCAGGCTGTT 3252855 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTG-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 |||| | || ||| || || | || ||||| ||||| || |||| || |||| Sbjct 3252856 ACCACCACCCAGTTCTTTAAG-GGCACGCACCATCTCCAGGTTGGTTTTGATGGGCAAGT 3252914 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC--GTGCAGGTCCCT 160708 | ||||||| ||| || | ||| ||||| || | | | || || |||||| | Sbjct 3252915 CCTGTCCGCACAGGTTAATTAAGTATTTCCA--ACGATCACTGATCAGGTAAAGGTCCTT 3252972 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| || || || || || |||||| ||| || || || | || || | Sbjct 3252973 CATGCAGTTAAGGTCAGCTTGGACACGACTCCAGCTAGCATAGACCACCTCTTCCAGCTG 3253032 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC---CAGAAAGAA 160825 |||||| | || |||||||| || || || || || | | || | | | | Sbjct 3253033 ACTGGCTATGAAAACGTTATCAAAGCAGGAGACAATGGCATTGATTGCTTTTACAGTGGA 3253092 Query 160826 CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 | ||| | |||| |||||| || | |||||| | ||||||||| ||||| |||| Sbjct 3253093 C-TCTGGGC--TCTTTTTGTCCACATGGATGCAATAAAAGTTCTGAGGAGCGTAAATGGA 3253149 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 | | | || |||||| ||| | ||| || |||| || || || || || Sbjct 3253150 GCGCAAGAGCCACTCGAAATTCTGCACCTTGTGGTGGACAACAATGGAATATGC 3253203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575173549585680