Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq58 105 8e-18 seq12 84.2 3e-11 >seq58 Length=3746050 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || ||| | | || ||||| ||||||||||| || || ||||| || |||||| Sbjct 1798030 TGGTATGCCATTATTGAGTCTCAGACAGAGACTGGAACTCCTTACATGCTCTATAAGGAT 1798089 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 ||||| || | ||| || ||||| ||||| |||| || ||||| | || || ||| Sbjct 1798090 GCTTGCAATAGGAAAAGCAACCAGCAGAATCTGGGCACTATCAAATCCAGCAACCTGTGC 1798149 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || ||||| |||||||||| |||||||||| Sbjct 1798150 ACAGAAATCGTAGAGTACACCAGTAAGGATGAG 1798182 >seq12 Length=6316961 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||| || |||||||| |||||||||||| | | || ||||| |||||||||||||||| Sbjct 2153026 AGAACCCCTTTGACTTCATGGAAAACATTTCCTTGGAGGGGAAAACCAACTTCTTTGAGA 2152967 Query 65501 AGCGAGTTGGGGACTA 65516 ||||||| || || || Sbjct 2152966 AGCGAGTAGGAGAGTA 2152951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594455372251840