Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq30 113 4e-20 seq155987 104 2e-17 seq82245 100 3e-16 seq241 100 3e-16 >seq30 Length=4849498 Score = 113 bits (124), Expect = 4e-20 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || ||||| || ||||| || || || || ||| Sbjct 2501781 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATTACCCTGGAGGTGGAGCCCAGT 2501722 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| ||||| || || || || || || Sbjct 2501721 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCAG 2501662 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 2501661 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTTTCTGACTACAAC 2501602 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGA 24939 || |||||||| || || || || | || |||| | || || ||| |||||| Sbjct 2501601 ATCCAAAAGGAGTCCACCCTCCATCTTGTTCTGCGTCTCCGTGGGGGC--AACTGA 2501548 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || ||||| || || || || || || || ||| Sbjct 2502009 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2501950 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| ||||| || || || || || || Sbjct 2501949 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCAG 2501890 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || |||||||||||| | | | | || || || ||| Sbjct 2501889 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTCTCTGACTACAAC 2501830 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| || ||||| || || || |||| Sbjct 2501829 ATTCAGAAAGAATCCACTCTCCATCTTG 2501802 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || ||||| || || || || || || || ||| Sbjct 2502237 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2502178 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| ||||| || || || || || || Sbjct 2502177 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGTATTCCACCTGACCAG 2502118 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || |||||||||||| | | | | || || || ||| Sbjct 2502117 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 2502058 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| || ||||| || || || |||| Sbjct 2502057 ATTCAGAAAGAATCCACTCTCCATCTTG 2502030 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || ||||| || ||||| || || || || || || || ||| Sbjct 2502466 GATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAG 2502407 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| ||||| ||||| || || || || || || Sbjct 2502406 TGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCA 2502347 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| |||||||||| || || || |||||||| | | | | || || || || Sbjct 2502346 ACAGCGTCTGATCTTTGCTGGCAAGCAATTGGAGGATGGTCGCACCCTCTCTGACTACAA 2502287 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || || ||||| || || || |||| Sbjct 2502286 CATCCAGAAAGAATCCACTCTCCATCTTG 2502258 >seq155987 Length=309 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | | Sbjct 277 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 218 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || ||||| || || Sbjct 217 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 158 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | |||| || || ||| Sbjct 157 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 98 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| ||||| |||| Sbjct 97 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 63 >seq82245 Length=399 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | | Sbjct 102 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 161 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 162 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 221 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | |||| || || ||| Sbjct 222 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 281 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| ||||| |||| Sbjct 282 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 316 >seq241 Length=1227248 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || || || || || | Sbjct 300888 ACAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCA 300947 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| ||||||||||| || ||||| || Sbjct 300948 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGAC 301007 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||| || || || |||||||| ||| | | | |||| || || Sbjct 301008 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTAC 301067 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || ||||| || || || ||| ||||| |||| Sbjct 301068 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 301105 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | | Sbjct 301119 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 301178 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || ||||| || || Sbjct 301179 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 301238 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | | || || || ||| Sbjct 301239 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTACAAC 301298 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| ||||| |||| Sbjct 301299 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 301333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448303174153040