Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq30 129 5e-25 seq241 123 2e-23 seq155987 107 1e-18 seq82245 104 2e-17 >seq30 Length=4849498 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | |||||| || | ||| || ||||||||||| |||||||| || || | | Sbjct 2502011 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAA 2502070 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || |||||| | |||| | ||||| || || ||| Sbjct 2502071 AGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2502130 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||||| ||||| ||| || | |||||| | || | |||||| | || || Sbjct 2502131 ATACCCTCTTTATCTTG-AATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 2502189 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||| | || || ||||| |||||||| Sbjct 2502190 CTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | |||||| || | ||| || ||||||||||| || ||||| || || | Sbjct 2502239 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2502298 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || | ||| ||||||||| | |||| | || || || || ||| Sbjct 2502299 AGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGA 2502358 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||| ||||| ||| || | |||||| | || | |||||| | || || Sbjct 2502359 ATGCCCTCTTTATCTTG-AATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 2502417 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || || || ||||| | || || ||||| |||||||| || Sbjct 2502418 CTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 2502468 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | |||||| || | ||| || ||||||||||| |||||||| || || | Sbjct 2501783 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAG 2501842 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || |||||| | |||| | ||||| || || ||| Sbjct 2501843 AGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2501902 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||| ||||| ||| || | |||||| | || | |||||| | || || Sbjct 2501903 ATGCCCTCTTTATCTTG-AATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 2501961 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||| | || || ||||| |||||||| Sbjct 2501962 CTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 >seq241 Length=1227248 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||||||||| || || ||||| || || || ||||| || || | Sbjct 301117 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301058 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || |||||||| | |||| || ||||| || || ||| Sbjct 301057 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 300998 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | || |||||| | || | |||||| | || || Sbjct 300997 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACC 300938 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || |||||||| | ||| || || || ||||||||| Sbjct 300937 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 300890 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 ||||| ||||| | ||||||||||| || || ||||| || || || ||||| || || Sbjct 301348 TGTCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 301289 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | ||||||| ||| || || || |||||||| | |||| || ||||| || || Sbjct 301288 GATAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGA 301229 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 ||||| || |||||||| || | || || || | || | ||||| | || Sbjct 301228 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCA 301169 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || |||||||| | ||| || || || |||||||| Sbjct 301168 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq155987 Length=309 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||||||||| || || ||||| || || || ||||| || || | Sbjct 51 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 110 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || |||||||| | |||| || ||||| || || ||| Sbjct 111 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 170 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | || || || | || | ||||| | || || Sbjct 171 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 230 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | ||| || || || |||||||| Sbjct 231 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 >seq82245 Length=399 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||||||||| || || ||||| || || || ||||| || || | Sbjct 328 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 269 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || |||||||| | |||| || ||||| || || ||| Sbjct 268 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 209 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| | || || Sbjct 208 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 149 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | ||| || || || |||||||| Sbjct 148 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383888122966038