Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq450 325 3e-83 seq416 201 8e-46 seq179 120 2e-21 seq19 100 2e-15 >seq450 Length=544606 Score = 325 bits (360), Expect = 3e-83 Identities = 963/1468 (66%), Gaps = 30/1468 (2%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| ||| || || ||||| |||||||| | ||| || || ||||| || || || | Sbjct 312855 CGGCAGACACGTTCAGGATACCGTTGGCATCAATATCGAAAGTCACTTCGATCTGGGGTA 312796 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || ||||| ||| | | || |||| || ||| || |||| Sbjct 312795 CACCACGTGGTGCTGGGGGGATACCTGTGAGCTCGAACCTTCCAAGCAGATTGTTGTCTT 312736 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 |||| | || ||||| || | | ||||| || | | || || ||||| | Sbjct 312735 TAGTCATGGCTCTCTCACCTTCATAGACCTGGATCAGCACACCTGGCTGGTTGTCTGAGT 312676 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || | ||| | |||| | | ||| || || || ||||| | | || | Sbjct 312675 AGGTGGAAAAGA-TCTGTGTCTGTTTGGTGGGGATGGTGGTGTTGCGTTTGATGAGGGCA 312617 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||||| | ||||| || || | || || || || |||| ||||| | || | Sbjct 312616 GTCATAACTCTTCCAGCGGTCTCGATGCCCAGTGATAGCGGAGCAACATCCAGCAGCAGC 312557 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | | || | |||||| ||| | ||| | || || || || || | || ||||| Sbjct 312556 AAGTCCTGGACGTTTTCAGAAGTGTCACCCATGAGGATGGCAGCCTGCACGGCTGCACCG 312497 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || || || |||||||| ||||||| | | || || | | |||||||| || | Sbjct 312496 TAAGCGACTGCTTCATCTGGATTAATGCTCTTGTTGAGGTCCCTGCCATTGAAGAACTCC 312437 Query 281843 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||| | ||| | | | || || | | ||||| ||||| || ||||| ||||| Sbjct 312436 TGCAGAAGCT-TCTGGATCCTGGGGATTCTTGTGGATCCGCCAACCAAGACAATATCATG 312378 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| || ||||||| ||| | ||| | | | ||||| || |||||||| | Sbjct 312377 AATCTGGGACTTATCCATTTTGGCATCTCTAAGAGCCTTTTCTACTGGTTCAAGGGTGCC 312318 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTGACATTATA 282018 |||||| | || || || || || || ||||||||| | |||| | | Sbjct 312317 TCTAAAGAGCTCAGAGTTTAGCTCCTCAAAGCGAGCTCTAGTTATGGAAGTG---TAGAA 312261 Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 |||||| || || |||| || |||| |||||| | | ||||| |||||| || | Sbjct 312260 ATCAATGCCATCAAACAGGGAGTCAATTTCAATGCTGGCCTGAGTGCTAGAAGACAGGGT 312201 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGAT 282134 || || || | ||||| ||||| | | || | | || || | ||| |||| Sbjct 312200 CCGCTTTGCTCTCTCACAGGCTGTGCGCAACCTCCTGACTGCCCTCTTGTTCTGGCTGAT 312141 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATT 282192 ||| |||| | |||||||| || || || ||| | |||| || | || || Sbjct 312140 G----TCTTTTTTGTGCTTTCTCTTAAACTCCTCCACAAAG--TGTTGGACCATGCGGTT 312087 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||||| || || || |||| | ||| | || | || ||| | || | || | || Sbjct 312086 GTCAAAGTCCTCCCCACCCAGGTGAGTGTCGCCAGCTGTTGCTTTCACCTCAAAGATACC 312027 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||| |||| | ||| | | |||||| || || || |||| ||||| || || || Sbjct 312026 ATCCTCAATGGTCAAGATGGACACATCAAAAGTGCCTCCTCCCAGGTCAAAGATCAGGAC 311967 Query 282313 ATTCATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 |||| | || | ||||| | || ||| ||||| |||| || ||||||||||| | Sbjct 311966 ATTCCTCTCCCCTTTCTTGCTCTTGTCCAAC-CCATAGGCAATGGCGGCAGCAGTTGGCT 311908 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| || || ||||| ||||| | ||||||||| ||| ||||| || || || || | Sbjct 311907 CATTGATGATCCTCAACACATTCAAGCCAGCAATTACTCCAGCATCCTTGGTAGCCTGCC 311848 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCA 282490 | ||||| || || ||||| || ||||| || || || |||| || | | || ||| Sbjct 311847 TCTGTGAGTCATTGAAATAAGCTGGAACTGTGATGACAGCATTGGTGATTCTCAGACCCA 311788 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG- 282549 | ||| || || | | |||||||| | | ||| || || || | ||||| Sbjct 311787 A-ATAGGCCTCAGCAATCTCCTTCATTTTGACCAGGACCATGGAGGAGATCTCCTCTGGG 311729 Query 282550 -AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608 ||||| | ||| | || | ||| ||||| | | |||||| | || ||| Sbjct 311728 TAGAATGT--CTTCGTCTCCCCCTTGTATTCTACTTGGACTTTTGGTTTGCTGCCGTCAT 311671 Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668 | || |||||||| ||||| ||||| || |||||||| |||||| ||| | || Sbjct 311670 TGATCACTTTAAAGGGCCAGAGCTTCATGTCAGATTGAACTACAGGGTCATCAAACTTTC 311611 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 |||||| | ||||| ||||||||||| || ||| | || || | ||| | || | || Sbjct 311610 GACCAATCAGACGTTTGGCATCAAAAATTGTGTTGTTGGGGTTCATGGCAACCTGGTTTT 311551 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| ||||||||||| || || || |||||||| | ||||| ||||||||| | Sbjct 311550 TGGCAGCATCTCCAATGAGCCTCTCAGTGTCTGTAAAGGCGACATAGCTTGGAGTTGTTC 311491 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 || || |||||||| ||||| |||||||| || |||| || | ||||| ||||| Sbjct 311490 TGTTGCCCTGATCATTGGCAATGATTTCAACATTGCCATGCTGGAACACACCCACACAGG 311431 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAAT 282876 |||| ||||| | || || ||||| Sbjct 311430 AGTAAGTAGTTCCCAGGTCGATTCCAAT 311403 >seq416 Length=617323 Score = 201 bits (222), Expect = 8e-46 Identities = 487/733 (66%), Gaps = 6/733 (1%) Strand=Plus/Plus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| || || ||| | | || || || || ||||| ||||| || ||| Sbjct 5618 TTCCTCTTGAATTCCTCCACAAAGTGGTTCACCAGGCGGTTGTCAAAGTCTTCTCCACCC 5677 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | ||| | ||||| || ||| | || | || | |||||||||| | || | Sbjct 5678 AGGTGAGTGTCTCCTGCTGTGGCTTTCACCTCAAAGATGCCATCTTCAATGGTCAGGATG 5737 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-TGTCTTG 282330 | ||||| ||||||||| |||| ||||| || || || || ||| | ||||| Sbjct 5738 GACACATCGAAGGTTCCACCTCCCAGGTCAAAGATCAGCACGTTGCGCTCTCCTTTCTTG 5797 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 ||| || || ||||| || | || ||||| || || ||||| || || |||| || Sbjct 5798 CCTTTG-TCCAGGCCATAGGCGATCGCTGCAGCTGTGGGCTCATTGATGATCCTCAGGAC 5856 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 || ||||||||||| ||| |||||||| ||||| || || || || || || || || Sbjct 5857 GTTCAGACCAGCAATCACTCCAGCATCTTTGGTGGCCTGCCTCTGGGAGTCATTGAAGTA 5916 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTG 282510 ||||| ||||||||||| |||| |||||| | | ||||| ||| || ||| | | Sbjct 5917 GGCAGGTACAGTAATAACAGCATTTGTTACCTTCTGTCCAAGATAGGCCTCTGCAATCTC 5976 Query 282511 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGCTTGGATTCA 282568 ||||| || | || ||| || || || | ||| || |||| | ||| | || Sbjct 5977 CTTCATCTTCACCAGAACCATGGAGGAGATCTCTTCAGGGTAGAAGCT--CTTCGTCTCT 6034 Query 282569 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAA 282628 || || |||| || | ||| || ||| || | | |||| || ||||| Sbjct 6035 CCTTTGTACTCAACTTGAACCTTTGGCTTTCCTCCATCACTGGTGACTTGGAAGGGCCAG 6094 Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688 | ||||| || ||||| || | | || | ||| | | || || | | || || Sbjct 6095 TGCTTCATGTCAGATTGTACGATAGGATCGTCAAACTTGCGGCCGATCAGCCTCTTGGCG 6154 Query 282689 TCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 282748 || || | || ||| | || || | || |||| | |||||| ||||||||||| || Sbjct 6155 TCGAACACGGTGTTGTTGGGGTTCATAGCTACTTGGTTTTTGGCAGCATCTCCAATGAGC 6214 Query 282749 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808 ||||| ||||| || | ||||| || || || | || || || ||||| ||| Sbjct 6215 CTCTCTGTGTCTGTGAAGGCCACATAGCTGGGGGTGGTCCTGTTTCCCTGGTCATTAGCA 6274 Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868 || || || ||||| |||| || | || ||||||||| | || || || | ||| Sbjct 6275 ATGATCTCCACTTTTCCATGCTGAAACACTCCTACACAAGAGTAGGTAGTGCCCAGGTCA 6334 Query 282869 ATACCAATAGCAA 282881 || |||||||||| Sbjct 6335 ATGCCAATAGCAA 6347 >seq179 Length=1632447 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| |||| |||||| ||||||||||| || || |||| || |||| Sbjct 628348 TTCTTGTCCAGGCCATAGGCAATAGCAGCTGCAGTTGGTTCGTTGATGATTCGCAGAACA 628289 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| |||||||||| || ||||| || | || || || || || ||| Sbjct 628288 TTTAGTCCAGAAATGGTTCCTGCATCCTTTGTGGCCTGACGCTGAGAGTCATTGAAGTAT 628229 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || |||||||| |||| ||| || Sbjct 628228 GCAGGTACTGTAATAACTGCATTTGTGAC 628200 Score = 91.5 bits (100), Expect = 1e-12 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 || |||| | || ||| | || || | || |||||| ||| || ||||||||||||| Sbjct 627723 CACCAAACACTGTGTTGTTGGGGTTCAGGGCCACTTGATTTTTTGCAGCATCTCCAATCA 627664 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | ||||| ||||| || | ||||| || || ||||| || || || ||||| | Sbjct 627663 GCCTCTCTGTGTCTGTGAAGGCGACATAACTGGGTGTGGTGCGGTTGCCCTGGTCATTGG 627604 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 |||| ||||||||||| |||| || | || |||||||| | || || || | | Sbjct 627603 CAATGATTTCAACTTTGCCATGCTGAAAAACGCCTACACATGAGTAGGTGGTCCCGAGGT 627544 Query 282867 CAATACCAATAGC 282879 |||| ||||| || Sbjct 627543 CAATGCCAATTGC 627531 >seq19 Length=5720146 Score = 100 bits (110), Expect = 2e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| || || ||||| || || | ||| | || | |||||||||||| || ||||| Sbjct 640233 CAAAGATGGTGTTGGTGGGGTTCATGGCAACCTGGTTTTTGGCTGCATCACCGATCAGCC 640174 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| | ||||| || | ||||| ||| || || | || ||||| ||||| |||| Sbjct 640173 TTTCGGAGTCTGTGAAAGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCATTGGCAA 640114 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 ||||||||||||| |||| || | || || ||||| | | || || || | ||||| Sbjct 640113 TAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAATAGGTGGTCCCCAGATCAA 640054 Query 282870 TACCAATAGC 282879 | |||| ||| Sbjct 640053 TGCCAACAGC 640044 Score = 100 bits (110), Expect = 2e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| || || ||||| || || | ||| | || | |||||||||||| || ||||| Sbjct 648235 CAAAGATGGTGTTGGTGGGGTTCATGGCAACCTGGTTTTTGGCTGCATCACCGATCAGCC 648176 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| | ||||| || | ||||| ||| || || | || ||||| ||||| |||| Sbjct 648175 TTTCGGAGTCTGTGAAAGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCATTGGCAA 648116 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 ||||||||||||| |||| || | || || ||||| | | || || || | ||||| Sbjct 648115 TAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAATAGGTGGTCCCCAGATCAA 648056 Query 282870 TACCAATAGC 282879 | |||| ||| Sbjct 648055 TGCCAACAGC 648046 Score = 87.8 bits (96), Expect = 1e-11 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| ||||| || | ||||||||||| || |||||||| |||| || ||||| |||| Sbjct 621809 CAAG-CCATAAGCGATGGCAGCAGCAGTAGGCTCATTAATGATTCGCAGCACATTTAGAC 621867 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 | | ||| | || |||||||| ||||| || | || || |||||||| || || || | Sbjct 621868 CGGAGATTGTGCCAGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTAAAGTAAGCTGGCA 621927 Query 282459 CAGTAATAACGGC 282471 | || || || || Sbjct 621928 CTGTTATCACAGC 621940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3726710864347068