Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq30 174 3e-38 seq168 86.0 1e-11 >seq30 Length=4849498 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | |||||| || | || ||||| ||||||||||| || || || |||| Sbjct 2502237 TACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 2502296 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || | ||| || ||||||||||| || | ||||| || || | Sbjct 2502297 AGAGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTG 2502356 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || |||||||||||||| || || ||||| ||||| || ||| | || || | Sbjct 2502357 GAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 2502416 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || ||||| || |||| |||||| ||||| |||||||| Sbjct 2502417 CCTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502465 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | |||||| || | || ||||| ||||||||||| || || || |||| Sbjct 2501781 TACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAG 2501840 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || |||||||||||||| || | || || || || | Sbjct 2501841 AGAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTG 2501900 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || |||||||||||||| || || ||||| ||||| || ||| | || || | Sbjct 2501901 GAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 2501960 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || |||| |||||| ||||| |||||||| Sbjct 2501961 CCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | |||||| || | || ||||| ||||||||||| || || || |||| Sbjct 2502009 TACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAG 2502068 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || |||||||||||||| || | || || || || | Sbjct 2502069 AAAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTG 2502128 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || |||||||||||||| || || ||||| ||||| || ||| | || || | Sbjct 2502129 GAATACCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 2502188 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || |||| |||||| ||||| |||||||| Sbjct 2502189 CCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||||||| | || || || || || || || || || || ||||| || | | ||| Sbjct 2501566 ACGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACC 2501625 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || ||||||||||| || | || || || || || || || || || Sbjct 2501626 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTT 2501685 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| || || || || ||||| || ||| | || || || |||| || || Sbjct 2501686 ATCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAAT 2501745 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| |||||| ||||| |||||||| Sbjct 2501746 GGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 >seq168 Length=1764021 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||| | | | || || || |||| ||| | || || ||||||||||| || | Sbjct 1748732 TGGTGGTATTTTGTCTCAAAGGGAGTAGAGTACCTGGACACAGTGTTTTTCATCCTACGT 1748673 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || ||||| || || || || ||||| ||||| ||||| || | || ||||| || | Sbjct 1748672 AAGAAGTTCAACCATGTCAGCTTTTTGCACGTTTATCACCACTGCACCATGTTCACCCTC 1748613 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | ||||| || ||| ||||||| || || Sbjct 1748612 TGGTGGATTGGCATCAAGTGGGTTGCCGGTGGACA 1748578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978260639672602