Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq82245 147 2e-30 seq155987 141 9e-29 seq241 141 9e-29 seq202961 120 3e-22 seq30 107 2e-18 seq58 86.0 6e-12 >seq82245 Length=399 Score = 147 bits (162), Expect = 2e-30 Identities = 154/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| ||| | || || |||||||||| Sbjct 299 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTGC 241 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| ||||| |||||||||||||| |||||| || Sbjct 240 CAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 181 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| | ||||| || || | ||||| ||| ||||| || || | Sbjct 180 TCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGG 121 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 120 TCTTCACGAAGATCTGCATG 101 >seq155987 Length=309 Score = 141 bits (156), Expect = 9e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| ||| | || || |||||||||| Sbjct 80 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTGC 138 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| ||||| |||||||| ||||| |||||| || Sbjct 139 CAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCT 198 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| | ||||| || || | ||||| ||| ||||| || || | Sbjct 199 TCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGG 258 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 259 TCTTCACGAAGATCTGCATG 278 >seq241 Length=1227248 Score = 141 bits (156), Expect = 9e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| ||| | || || |||||||||| Sbjct 301088 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTGC 301030 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| ||||| |||||||| ||||| |||||| || Sbjct 301029 CAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCT 300970 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | ||||| || || | ||||| ||| ||||| || || | Sbjct 300969 TGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGG 300910 Query 133642 TTTTTACGAAAATCTGCATGGCTTA 133666 | || ||||| |||||||| | ||| Sbjct 300909 TCTTCACGAAGATCTGCATTGTTTA 300885 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| ||| | || || |||||||||| Sbjct 301316 GGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGACCA-TCTTCCAGCTGCTTGC 301258 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| ||||| |||||||| ||||| |||||| || Sbjct 301257 CAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCT 301198 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| | ||||| || || | ||||| ||| ||||| || || | Sbjct 301197 TCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGG 301138 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 301137 TCTTCACGAAGATCTGCATG 301118 >seq202961 Length=268 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| ||| | || |||| ||||||||| ||||| |||||||| ||| Sbjct 256 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTG 197 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||||| |||||| | ||||| || || | ||||| | Sbjct 196 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATG 137 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| || || || || ||||| ||||||||| Sbjct 136 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 101 >seq30 Length=4849498 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || | ||| | | | ||||| |||||||| || Sbjct 2501813 GTGGATTCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGTCCA-TCCTCCAGCTGCTTTCC 2501871 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || || ||||| || || || ||||| ||| Sbjct 2501872 AGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTTGGCCTT 2501931 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 2501932 GACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCGT 2501991 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 2501992 CTTCACAAAGATCTGCAT 2502009 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| || || || ||||| || | || ||| | || || |||| Sbjct 2501578 ATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCA-TCTTCCAGCT 2501636 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| || || ||||| || || || |||| Sbjct 2501637 GCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCT 2501696 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| |||||||||| || | ||| | ||| || || | Sbjct 2501697 TGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTACCAG 2501756 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 2501757 TCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || | ||| | | | ||||| |||||||| || Sbjct 2502041 GTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCA-TCCTCCAGCTGCTTTCC 2502099 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || || || || || || || ||||| ||| Sbjct 2502100 AGCAAAGATCAGACGCTGCTGGTCAGGTGGAATACCCTCTTTATCTTGAATCTTGGCCTT 2502159 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 2502160 GACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCGT 2502219 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 2502220 CTTCACAAAGATCTGCAT 2502237 >seq58 Length=3746050 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||||||||| || | |||||| |||||| ||||||| ||||| |||| || | Sbjct 1798168 TGTACTCTACGATTTCTGTGCACAGGTTGCTGGATTTGATAGTGCCCAGATTCTGCTGGT 1798109 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 |||| || || ||||| || ||||| || |||||||| || Sbjct 1798108 TGCTTTTCCTATTGCAAGCATCCTTATAGAGCATGTAAGG 1798069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481707568770320