Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq554 156 5e-33 seq45 105 8e-18 >seq554 Length=433404 Score = 156 bits (172), Expect = 5e-33 Identities = 246/348 (71%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 176945 GGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 |||||| ||| | ||||| | | |||||| ||||| |||| ||||| ||| ||| | Sbjct 426325 GGCCAGCTCTTTCGGGGAGGAGAAGTCGTCAACGTGGATGATGGCGTCGCCCTCCACGAA 426384 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATA-AGAG 177063 ||| || || ||||| |||| || || || || | ||| |||| || | || | |||| Sbjct 426385 ATTCTCATAGTTCTCCCTCGGTGGGCCCAGGACGACGGGCACCGTGCC-GACAGAGAGAG 426443 Query 177064 ATCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGA 177123 ||||||||| || || || ||||| |||| | |||||||||||||| | |||| Sbjct 426444 GGTTGTAGAGTTTCTCTGTGATGTAGTCTTTGTGAATCGAGTTCTCAAACGCCAAGTAGA 426503 Query 177124 ATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTAC 177181 | |||||| | |||||| |||| | |||| | || | ||| || || || | | Sbjct 426504 ACTTACAGCTGGCGATAGT--GGGGAAGTAGTCCTGGTCAGATATGTACTCACCGAAAGC 426561 Query 177182 GTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCAC 177241 | |||||| | || || || |||||||| || || |||||| || ||| || Sbjct 426562 TTGCCCGTACGCGTGAATCTCAATGTGTTTGTACAGTTCGTTGTAGTACTTCACTCTGAC 426621 Query 177242 GTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 ||| || |||||||||||| |||| |||||||| |||||| |||| Sbjct 426622 GTGATCTGGGTTCCAATTGCTCACGATCCAGCAAATCAACTTGTTCTT 426669 >seq45 Length=4121683 Score = 105 bits (116), Expect = 8e-18 Identities = 338/520 (65%), Gaps = 12/520 (2%) Strand=Plus/Plus Query 162458 TCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGT 162517 |||| | |||||| || | ||| ||||||| ||||| ||||| ||| ||||| Sbjct 3252699 TCACCACAAAGTATGCACCACCTGAAAACAGTTTTATGCCATGGGGAGGAGGCATTTTGT 3252758 Query 162518 CTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCA 162577 |||| | || | | | || ||| || | ||||| |||| |||| | | || Sbjct 3252759 CTTGGTCTGTAATCTGGATGGTGCCGTCTTTCACAATGTGTCGCTTCTTCCATCGGACCT 3252818 Query 162578 TCTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCT 162637 |||| | || | | |||||||| || ||||||| ||| |||| | || || Sbjct 3252819 CCTTATGAGCAGGCATGGACTCGGTCTCCAGGCTGTTACCACCACCCAGTTCTTTAAGGG 3252878 Query 162638 GACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACAT 162697 |||||||||||| || ||||| || | ||| ||||| ||||| || ||||| | | Sbjct 3252879 CACGCACCATCTCCAGGTTGGTTTTGATGGGCAAGTCCTGTCCGCACAGGTTAATTAAGT 3252938 Query 162698 ATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGC 162757 ||||||| | | |||| ||| || |||| | ||||| || || || ||||| | Sbjct 3252939 ATTTCCAACGATCACTGATCAGGTAAAGGTCCTTCATGCAGTTAAGGTCAGCTTGGACAC 3252998 Query 162758 GACTCCACGACGCGTACACGACGCTC-TCCAACCTAGTGGCGACAAAGACATTGTCGAAA 162816 ||||||| || || || || ||| |||| | | |||| | || || || || || Sbjct 3252999 GACTCCAGCTAGCATAGACCAC-CTCTTCCAGCTGACTGGCTATGAAAACGTTATCAAAG 3253057 Query 162817 CACGAAACTATCCCCATCACGGC-----CAGTGAGAACATCGGGTCCGCTTTCCTATCTA 162871 || || || || | | | || ||||| || | || || || | || | Sbjct 3253058 CAGGAGACAATGGCATTGATTGCTTTTACAGTG-GACTCTGGGCTC----TTTTTGTCCA 3253112 Query 162872 CGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCT 162931 | || | ||| || | |||||||| ||||| |||| | || | | |||||| ||| Sbjct 3253113 CATGGATGCAATAAAAGTTCTGAGGAGCGTAAATGGAGCGCAAGAGCCACTCGAAATTCT 3253172 Query 162932 CTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAA 162971 | ||| ||||| || || || ||||| || | ||||| Sbjct 3253173 GCACCTTGTGGTGGACAACAATGGAATATGCCAGTGGGAA 3253212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576382051452800