Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq30 100 3e-16 seq58 91.5 1e-13 seq155987 84.2 2e-11 >seq30 Length=4849498 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||| | ||| | | | ||||| ||||| ||||||||||| | |||||| | Sbjct 2501567 CGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCA 2501626 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| |||||||| || || || || ||||| |||||| Sbjct 2501627 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTA 2501686 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | || | || || | |||||||| || | || | Sbjct 2501687 TCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATG 2501746 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||||||||| || || | || |||||||| Sbjct 2501747 GTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| |||||||||||||| | ||| || ||| || ||||| || || | | Sbjct 2501816 GATTCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCA 2501875 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| |||||||| ||| || || | Sbjct 2501876 AAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACA 2501935 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || ||||||||||| || || Sbjct 2501936 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTC 2501995 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 2501996 ACAAAGATCTGCAT 2502009 >seq58 Length=3746050 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||||| | ||||||||||||| |||| || |||| ||| ||||| | Sbjct 1798168 TGTACTCTACGATTTCTGTGCACAGGTTGCTGGATTTGATAGTGCCCAGATTCTGCTGGT 1798109 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 ||||||||| |||||| || || || |||||||||| || Sbjct 1798108 TGCTTTTCCTATTGCAAGCATCCTTATAGAGCATGTAAGG 1798069 >seq155987 Length=309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || |||||||||||| || ||| || | Sbjct 63 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA 122 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| || | ||| || || ||||| ||||||||||| Sbjct 123 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTG 182 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | || | Sbjct 183 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATG 242 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || || || | ||| ||||||||| Sbjct 243 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474922101822480