Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq482 93.3 3e-14 seq2 91.5 1e-13 >seq482 Length=493118 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA- 19608 ||||||||||||| | ||||| ||||| || ||||||||||| ||||| | || | | Sbjct 211542 TGCACATTATAATCTTTGATGAGTTGGATGCGATCTGTAAGCAGAGAGGAACCGGAGCAA 211483 Query 19609 -----AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 | |||||| || |||||||| |||||||| || ||||| ||| | || || || Sbjct 211482 GCAGCACTGGAGTTCACGACACTGTAGTCAATCAGCTGCTGTCCAAAATTGATGGAGTGG 211423 Query 19664 ACCAACTGAATAATATTTTAGTTATTGG 19691 | ||||| || || || | ||||| || Sbjct 211422 AGCAACTTAACAACATCCTGGTTATAGG 211395 >seq2 Length=9864463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| |||| |||| ||||| | || |||||||| || || || || || ||||| Sbjct 2389561 GGAGA--GACTGATCGCATTTGCGGCAGTAGAAGGCATCTTTTTCTCGGGGTCATTTGCC 2389618 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||| | |||||||||||| ||||| ||||||| || | || | ||||||||| | Sbjct 2389619 GCCATCTACTGGTTAAAGAAAAGAGGTCTGATGCCCGGACTTACATACTCAAATGAGCTC 2389678 Query 44243 ATAAGTCGTGATGA 44256 || || || ||||| Sbjct 2389679 ATCAGCCGAGATGA 2389692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396082640225590