Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 6e-13 seq58 84.2 2e-11 >seq12 Length=6316961 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||| |||||||| |||||||| || || |||||| |||||||| Sbjct 2154631 GCCTTTGC-TGCTGTGGAGGGAATCTTTTTCTCTGGTTCTTTTGCTGCTATCTTCTGGCT 2154573 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | ||||||||||| || || | |||||||| ||||| || Sbjct 2154572 AAAGAAGAGGGGCCTCATGCCTGGGCTCACGTTCTCCAATGAGCTTAT 2154525 >seq58 Length=3746050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||| ||||||| | ||| ||||| |||| ||||| || || || Sbjct 1799229 GTAGATGTTGCTGGTGTAGGGCTCGATGGACTCATTGTTGCCCAGAATCTGTGCTGTGGA 1799170 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGC 78639 || || ||||||||||| | |||||| ||||| | ||||||| Sbjct 1799169 AGCAGTAGGCATGGGTGCCAGTAGTAGACTGTTCCGTACACCATGC 1799124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546580841821920