Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq336 96.9 4e-15 seq168 93.3 5e-14 >seq336 Length=834702 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || | |||||||| || | || | ||| || ||| | |||||||| |||| Sbjct 506369 TGTGGTGGTACTACATCTCTAAGGGAGTCGAGTTTCTGGACACTGTGTTCTTCATCATGA 506428 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 ||||||| |||||||| || ||||| ||||||| |||||||| | |||||||| | Sbjct 506429 GAAAGAAGTTTAACCAGGTCAGCTTCCTGCACGTCTACCACCACTGCACCATGTTCATCC 506488 Query 32794 TAGGATGGATAGGGATTAAATGG 32816 | | ||||| || || || ||| Sbjct 506489 TGTGGTGGATCGGCATCAAGTGG 506511 >seq168 Length=1764021 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 32676 TGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGAGA 32735 |||| |||||| |||| || || |||| || || || || | || ||||| | | Sbjct 1748732 TGGTGGTATTTTGTCTCAAAGGGAGTAGAGTACCTGGACACAGTGTTTTTCATCCTACGT 1748673 Query 32736 AAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTTTA 32795 ||||| || ||||| || |||||||||||||| || ||||| | |||||||| || | Sbjct 1748672 AAGAAGTTCAACCATGTCAGCTTTTTGCACGTTTATCACCACTGCACCATGTTCACCCTC 1748613 Query 32796 GGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 | ||||| || || || ||| |||| || |||||| Sbjct 1748612 TGGTGGATTGGCATCAAGTGGGTTGCCGGTGGACAG 1748577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601043142324320