Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq30 104 1e-17 >seq30 Length=4849498 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| || | |||||||||| || || || ||||| || || || Sbjct 2502239 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2502298 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | ||| || || ||||| || | |||||||||||| || || Sbjct 2502299 AGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGA 2502358 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| || ||| ||| || | || || | ||| ||||| | |||||| Sbjct 2502359 ATGCCCTCTTTATCT-TGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 2502417 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| || || || ||||| || | ||| |||||||| |||||||| || Sbjct 2502418 CTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 2502468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313642091011694