Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq30 147 2e-30 seq241 127 2e-24 seq155987 125 6e-24 seq202961 84.2 2e-11 >seq30 Length=4849498 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | ||||| || || ||||| || Sbjct 2501781 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATTACCCTGGAGGTGGAGCCCAGT 2501722 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || |||||||| ||||| ||||| ||||| || || Sbjct 2501721 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCAG 2501662 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||||| || ||| |||| || |||||| Sbjct 2501661 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTTTCTGACTACAAC 2501602 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || ||||||||||| ||| | ||| | ||| ||||| | || || |||| Sbjct 2501601 ATCCAAAAGGAGTCCACCCTCCATCTTGTTCTGCGTCTCCGTGGGGGCA 2501553 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | || || || || ||||| || Sbjct 2502009 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2501950 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || |||||||| ||||| ||||| ||||| || || Sbjct 2501949 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCAG 2501890 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| || | ||| | || || |||||| Sbjct 2501889 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTCTCTGACTACAAC 2501830 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| || || || || | ||| | || ||||| Sbjct 2501829 ATTCAGAAAGAATCCACTCTCCATCTTGTCCTGCGT 2501794 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | || || || || ||||| || Sbjct 2502237 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2502178 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || |||||||| ||||| || || ||||| || || Sbjct 2502177 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGTATTCCACCTGACCAG 2502118 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| || | ||| |||| || |||||| Sbjct 2502117 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 2502058 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| || || || || | ||| | || ||||| Sbjct 2502057 ATTCAGAAAGAATCCACTCTCCATCTTGTCCTGCGT 2502022 >seq241 Length=1227248 Score = 127 bits (140), Expect = 2e-24 Identities = 188/266 (71%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 26955 AATAAGAGCAATAAATTTTTTAATTTA---TACGCCATGCAGATATTTGTAAAAACTCTG 27011 |||||| | | ||||||||||| | || | |||||||| || || || || || Sbjct 300855 AATAAGCCAATTTAATTTTTTAATGCAGATTAAACAATGCAGATCTTCGTGAAGACCCTC 300914 Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | || || ||||| || || || ||| | ||||||| ||||| Sbjct 300915 ACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGTGACACCATTGAGAATGTCAAGGCC 300974 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || |||||||||||||| || || || || ||| | | || | ||| ||||| Sbjct 300975 AAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTGATCTTCGCTGGCAAG 301034 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || ||||||| || ||| | ||||| |||||||| || |||||||| ||| | || Sbjct 301035 CAGCTGGAAGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 301094 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||||| | |||| ||||| Sbjct 301095 CTGGTGCTGCGTCTCAGGGGCGGCAT 301120 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || ||||| || || || Sbjct 301115 CGGCATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 301174 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||| | ||||||| || || || || || |||||||||||||| || || || Sbjct 301175 AAGCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 301234 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||| | | || | ||| ||||| || ||||||| || ||| | || || || Sbjct 301235 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTA 301294 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || |||||||| ||| | || |||| ||||| | |||| || Sbjct 301295 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 301345 >seq155987 Length=309 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || ||||| || || || Sbjct 281 CGGCATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 222 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||| | ||||||| || || || || || |||||||||||||| || || || Sbjct 221 AAGCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 162 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||| | | || | ||| ||||| || ||||||| || ||| | ||||| || Sbjct 161 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTA 102 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||| ||| | || |||| ||||| | |||| ||||| Sbjct 101 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGCAT 48 >seq202961 Length=268 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || ||||| || || || Sbjct 98 CGGCATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 157 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||| | ||||||| || || || || || |||||||||||||| || || || Sbjct 158 AAGCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 217 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || ||| | | || | ||| ||||| || ||||||| Sbjct 218 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433418782504574