Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq652 102 7e-17 >seq652 Length=327282 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||||||||| || |||| || || ||||| ||||| ||| | || || | Sbjct 262238 GGTGTGAAGATCTGGGATGCGAACGGCTCACGGGACTTCCTGGATAAGAGTGGATTTACT 262297 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || |||||||| || | ||||| || ||||| |||||||||||||||||||| || Sbjct 262298 GAGCGTGAGGAGGGAGATCTAGGCCCTGTATACGGTTTCCAGTGGAGACACTTTGGTGCT 262357 Query 34442 GAGTAT 34447 |||||| Sbjct 262358 GAGTAT 262363 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 |||||| || |||||||||||||||||||| ||||| || ||||| | || |||||||| Sbjct 262363 ATACTCAGCACCAAAGTGTCTCCACTGGAAACCGTATACAGGGCCTAGATCTCCCTCCTC 262304 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | || || | ||| ||||| ||||| || || |||| || ||||||||||| Sbjct 262303 ACGCTCAGTAAATCCACTCTTATCCAGGAAGTCCCGTGAGCCGTTCGCATCCCAGATCTT 262244 Query 7018 CACCCC 7023 ||| || Sbjct 262243 CACACC 262238 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||| | ||||||||||| || || || ||||| | || ||||| ||||| || | | Sbjct 263027 GATTTGCCTCTGATGGCTCTTCCACCCTGCCATGCTCTATGCCAGTTCTATGTGTCTGAG 263086 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || ||||| |||||| | || || || || ||||| || || | || ||||| ||| Sbjct 263087 GGCGAACTGTCATGCCAGTTATACCAGCGTTCAGGAGATATCGGTCTGGGTGTGCCCTTC 263146 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || || || || ||||||||||| || Sbjct 263147 AACATCGCCAGCTATGCCCTACTGACCTACATGATCGCCCA 263187 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || || || || || |||||||| ||||| || | || Sbjct 263187 TGGGCGATCATGTAGGTCAGTAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGACCG 263128 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || || || || | |||||| ||||| || || | | || ||||| ||| Sbjct 263127 ATATCTCCTGAACGCTGGTATAACTGGCATGACAGTTCGCCCTCAGACACATAGAACTGG 263068 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | ||||| || || || ||||||||||| | ||| Sbjct 263067 CATAGAGCATGGCAGGGTGGAAGAGCCATCAGAGGCAAATC 263027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446673769260960