Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 1e-14 >seq30 Length=4849498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || | ||| || ||| ||||| || || || || || | Sbjct 2501783 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAG 2501842 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||| || || ||||| || |||||||||||||| | || Sbjct 2501843 AGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2501902 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||| || || || |||| || | | || || || | |||||| Sbjct 2501903 ATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 2501962 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || |||||||| || |||||||| ||||| Sbjct 2501963 TCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || | ||| || ||| ||||| || || || || || | | Sbjct 2502011 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAA 2502070 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||| || || ||||| || |||||||||||||| | || Sbjct 2502071 AGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2502130 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||| || || || |||| || | | || || || | |||||| Sbjct 2502131 ATACCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 2502190 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || |||||||| || |||||||| ||||| Sbjct 2502191 TCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || | ||| || ||| ||||| || || || || || | Sbjct 2502239 CCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2502298 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | || ||||| ||||| || |||||||| ||||| | || Sbjct 2502299 AGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGA 2502358 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||| || || || |||| || | | || || || | |||||| Sbjct 2502359 ATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 2502418 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 |||| ||||| | || || |||||||| || |||||||| ||||||||||||| Sbjct 2502419 TCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGC 2502473 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| ||||| || || || || | ||| || || | || || ||||| Sbjct 2501578 ATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCTTCCAGCTG 2501637 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| || |||||||||||||| | || | || |||||| || || || Sbjct 2501638 CTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTT 2501697 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| || | | || || || | |||||| |||| || || | || || || Sbjct 2501698 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTACCAGT 2501757 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 |||||| || |||||||| ||||| Sbjct 2501758 CAGCGTCTTCACAAAGATCTGCAT 2501781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428061358603934