Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq241 95.1 8e-15 seq155987 89.7 3e-13 >seq241 Length=1227248 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || |||||||| || || || ||||| || || ||||| | | Sbjct 300890 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 300949 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || | | ||||||||||| | || || || | Sbjct 300950 TGACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAAGAAGGCATTCCTCCTGACC 301008 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || || || ||||| || |||||||| | ||||| | ||| |||| Sbjct 301009 AGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACA 301068 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 301069 ACATCCAGAAGGAGTCCAC 301087 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| | | Sbjct 301119 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 301178 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||||||||| | || || || || Sbjct 301179 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 301238 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || |||||||| | ||||| || || |||||| Sbjct 301239 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTACAAC 301298 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 301299 ATCCAGAAGGAGTCCAC 301315 >seq155987 Length=309 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| | | Sbjct 277 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 218 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||||||||| | || || || || Sbjct 217 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 158 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || |||||||| | ||||| | ||| |||||| Sbjct 157 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 98 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 97 ATCCAGAAGGAGTCCAC 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336841649867144