Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq82245 132 1e-25 seq241 129 1e-24 seq30 129 1e-24 seq155987 127 5e-24 seq202961 96.9 8e-15 >seq82245 Length=399 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || |||||||| ||||| || || |||| ||||| |||| || || | ||||| Sbjct 314 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 255 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || ||||| || ||||| ||||||||||| Sbjct 254 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 195 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | || || || | ||||| || Sbjct 194 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 135 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | || || | ||| | ||||| Sbjct 134 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq241 Length=1227248 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || |||||||| ||||| || || |||| ||||| |||| || || | ||||| Sbjct 301103 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 301044 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || ||||| || ||||| ||||| ||||| Sbjct 301043 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 300984 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| | || || || | ||||| || Sbjct 300983 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGT 300924 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| || | || || | ||| | |||||| Sbjct 300923 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 300890 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || |||||||| ||||| || || |||| ||||| || | | || | ||||| Sbjct 301331 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGACCATC 301272 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || ||||| || ||||| ||||| ||||| Sbjct 301271 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 301212 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | || || || | ||||| || Sbjct 301211 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 301152 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | || || | ||| | ||||| Sbjct 301151 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq30 Length=4849498 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||||||||||||||| || | ||||| || | | || | ||||| Sbjct 2502025 CAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATC 2502084 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||| ||||| || || || ||||| || |||||||| || || || Sbjct 2502085 CTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATACCCTCTTTATC 2502144 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| ||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 2502145 TTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2502204 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 2502205 CTTACCAGTCA 2502215 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||||||||||||||| || | ||||| || | | || | ||||| Sbjct 2501797 CAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGTCCATC 2501856 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||| ||||| || || || ||||| || ||||| || || || || Sbjct 2501857 CTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATC 2501916 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| ||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 2501917 TTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2501976 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 2501977 CTTACCAGTCA 2501987 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||||||||||||||| |||| ||||| || | | || | ||||| Sbjct 2502253 CAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATC 2502312 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || | ||||| ||||| ||||| || || |||||||| || ||||| || || || || Sbjct 2502313 CTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGAATGCCCTCTTTATC 2502372 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| ||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 2502373 TTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 2502432 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 2502433 CTTACCAGTCA 2502443 >seq155987 Length=309 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || |||||||| ||||| || || |||| ||||| |||| || || | ||||| Sbjct 65 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 124 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || ||||| || ||||| ||||| ||||| Sbjct 125 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 184 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | || || || | ||||| || Sbjct 185 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 244 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | || || | ||| | ||||| Sbjct 245 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 >seq202961 Length=268 Score = 96.9 bits (106), Expect = 8e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||||||||| || | || ||||| || ||||| ||||| Sbjct 259 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 200 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| |||||| || |||||||| | || || || | ||| Sbjct 199 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 140 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || | || || | ||| | ||||| Sbjct 139 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1188199241721492