Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq652 120 2e-22 >seq652 Length=327282 Score = 120 bits (132), Expect = 2e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | |||||||||||||| |||||| Sbjct 263199 AGTCCTGTGATGTGGGCGATCATGTAGGTCAGTAGGGCATAGCTGGCGATGTTGAAGGGC 263140 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || || || || ||||| | |||||| | |||||| || || || || || | Sbjct 263139 ACACCCAGACCGATATCTCCTGAACGCTGGTATAACTGGCATGACAGTTCGCCCTCAGAC 263080 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 || || ||||| || | |||||||| || ||||| ||||| ||| ||| ||| Sbjct 263079 ACATAGAACTGGCATAGAGCATGGCAGGGTGGAAGAGCCATCAGAGGCAAATCT 263026 Score = 104 bits (114), Expect = 2e-17 Identities = 113/149 (76%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG--- 30073 || || ||||||||||| ||||| || || || || |||||||| || | |||| Sbjct 262350 AAGTGTCTCCACTGGAAACCGTATACAGGGCCTAGATCTCCCTCCTCAC---GCTCAGTA 262294 Query 30074 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30133 || || ||||| |||| ||||| | || ||||| || ||||||||||| || || ||| Sbjct 262293 AATCCACTCTTATCCAGGAAGTCCCGTGAGCCGTTCGCATCCCAGATCTTCACACCTTTC 262234 Query 30134 TCGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || |||||||||| |||||| || || Sbjct 262233 TCTGAAAGCTCTTTGGCGTTTGTTGAACC 262205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404759753578948