Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq652 111 1e-19 >seq652 Length=327282 Score = 111 bits (122), Expect = 1e-19 Identities = 128/171 (75%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| | ||||| || || || || ||||| ||||| ||||| || || || || || Sbjct 262372 CATGTCTTTATACTCAGCACCAAAGTGTCTCCACTGGAAACCGTATACAGGGCCTAGATC 262313 Query 27549 TCCCTCTTCCCTGTGCTCG---AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 27605 |||||| || | |||| || || ||||| |||| ||||| | || ||||| || Sbjct 262312 TCCCTCCTCAC---GCTCAGTAAATCCACTCTTATCCAGGAAGTCCCGTGAGCCGTTCGC 262256 Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||||| || || ||||| || |||||||||| |||||| || || Sbjct 262255 ATCCCAGATCTTCACACCTTTCTCTGAAAGCTCTTTGGCGTTTGTTGAACC 262205 Score = 102 bits (112), Expect = 6e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | |||||||||||||| ||||| Sbjct 263199 AGTCCTGTGATGTGGGCGATCATGTAGGTCAGTAGGGCATAGCTGGCGATGTTGAAGGGC 263140 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || || || || || || | |||||| | ||| || || || || || || Sbjct 263139 ACACCCAGACCGATATCTCCTGAACGCTGGTATAACTGGCATGACAGTTCGCCCTCAGAC 263080 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| |||| || ||||| || ||||||||||| || Sbjct 263079 ACATAGAACTGGCATAGAGCATGGCAGGGTGGAAGAGCCATCAG 263036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368230413827858