Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq58 102 1e-16 seq2 84.2 3e-11 >seq58 Length=3746050 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || || || |||||||| || || ||| ||| | || ||||| ||||| |||| Sbjct 1800552 TCCAGCCATAAAAGTGCATGCTAGTGAGCTTGCCGTAATTGGGCTCGGCAATATGGATAT 1800493 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||| || |||||||| ||||||||||| ||||| || || | || Sbjct 1800492 TGAGGGACTGGCTTTGGTCAATGAAAGCCCCTCTATCAGCAGCCATCTTAATGACCACCT 1800433 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 | |||| ||| ||||| | ||| || | | | ||| | |||||||| Sbjct 1800432 TCTGAGAAATCTCCCACACAGTCTTATACAACTCTTTCAGGTCATCTGG 1800384 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 || || || || || || || ||||||||||||||||||| || |||||||| || || Sbjct 1798157 ATTTCTGTGCACAGGTTGCTGGATTTGATAGTGCCCAGATTCTGCTGGTTGCTTTTCCTA 1798098 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||||| || || | ||||| || || || |||| || || ||||| Sbjct 1798097 TTGCAAGCATCCTTATAGAGCATGTAAGGAGTTCCAGTCTCTGTCTGAGACTCAATAAT 1798039 >seq2 Length=9864463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||| || || | || || || |||| || |||||||| || || | ||| || Sbjct 2389692 TCATCTCGGCTGATGAGCTCATTTGAGTATGTAAGTCCGGGCATCAGACCTCTTTTCTTT 2389633 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| | || || || || || || || || || ||||||||||| |||||||||||| Sbjct 2389632 AACCAGTAGATGGCGGCAAATGACCCCGAGAAAAAGATGCCTTCTACTGCCGCAAATGCG 2389573 Query 48285 GTAAGTCTCTCTCC 48298 | |||||||| || Sbjct 2389572 ATCAGTCTCTCCCC 2389559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692206911139520