Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq241 129 1e-24 seq82245 122 2e-22 seq155987 116 9e-21 seq30 107 4e-18 seq202961 87.8 4e-12 >seq241 Length=1227248 Score = 129 bits (142), Expect = 1e-24 Identities = 165/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || ||||| || ||||||||||| |||| | || Sbjct 301112 CCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 301053 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| |||||||||||||| | | || || Sbjct 301052 GCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 300993 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || |||||| |||| | | |||| ||| ||| || || Sbjct 300992 TTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTTGGCTCAACCTC 300936 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || ||||| ||||| ||||||||||||| ||||||| Sbjct 300935 AAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 300890 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || ||||| || ||||||||||| || | || || Sbjct 301340 CCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGT 301281 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| |||||||||||||| | | || || Sbjct 301280 GCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 301221 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || || || || || |||| | | |||| ||| || ||||| Sbjct 301220 TTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAG 301161 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||||||||||| |||||| Sbjct 301160 GGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq82245 Length=399 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || ||||| || ||||||||||| |||| | || Sbjct 323 CCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 264 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| |||||||||||||| | | || || Sbjct 263 GCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 204 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| ||| || ||||| Sbjct 203 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAG 144 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||||||||||| |||||| Sbjct 143 GGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq155987 Length=309 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || ||||| || ||||||||||| |||| | || Sbjct 56 CCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 115 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| |||||||||||||| | | || || Sbjct 116 GCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 175 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || || || || || |||| | | |||| ||| || ||||| Sbjct 176 TTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAG 235 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||||||||||| |||||| Sbjct 236 GGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 >seq30 Length=4849498 Score = 107 bits (118), Expect = 4e-18 Identities = 165/233 (71%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||||||||| ||||| || ||||| ||||||||||| || | | || Sbjct 2502245 CTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTG 2502304 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || || ||||| || | ||| ||||| | | || || Sbjct 2502305 CGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGAATGCCC 2502364 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || |||||||| || |||||| |||| | | |||| ||| ||| || || Sbjct 2502365 TCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCC 2502421 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACCCT 152112 ||||| || || || || || || |||||||| |||| |||||| ||||| || Sbjct 2502422 AGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCT 2502474 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| |||||||||||||| || | | || | |||||| Sbjct 2501570 AGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCT 2501629 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | || || || || ||| Sbjct 2501630 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCT 2501689 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || ||||| |||| | | |||| ||| ||| || || || ||||| Sbjct 2501690 TGAATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTAATG 2501746 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| |||| |||||| Sbjct 2501747 GTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 105 bits (116), Expect = 2e-17 Identities = 161/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||||||||| ||||| || ||||| || |||||||| || | | || Sbjct 2501789 CTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGGGTG 2501848 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| || || ||||| || | ||||||||| | | || | Sbjct 2501849 CGTCCATCCTCCAGCTGCTTT--CCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGC 2501906 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 | || || |||||||| || |||||| |||| | | |||| ||| ||| || | Sbjct 2501907 CCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCT 2501963 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || || || || |||||||| |||| |||||| Sbjct 2501964 CCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 105 bits (116), Expect = 2e-17 Identities = 161/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||||||||| ||||| || ||||| || |||||||| || | | || Sbjct 2502017 CTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTG 2502076 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| || || ||||| || | ||||||||| | | || | Sbjct 2502077 CGTCCATCCTCCAGCTGCTTT--CCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATAC 2502134 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 | || || |||||||| || |||||| |||| | | |||| ||| ||| || | Sbjct 2502135 CCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCT 2502191 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || || || || |||||||| |||| |||||| Sbjct 2502192 CCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 >seq202961 Length=268 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| |||||||||||||| | | || ||||| Sbjct 259 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 200 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || || |||| | | |||| ||| || ||||| || Sbjct 199 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 140 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||||||||| |||||| Sbjct 139 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149629460128578