Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq30 159 7e-34 seq82245 123 5e-23 seq241 123 5e-23 seq155987 118 2e-21 seq28 93.3 9e-14 seq229 89.7 1e-12 seq58 89.7 1e-12 seq82 84.2 5e-11 >seq30 Length=4849498 Score = 159 bits (176), Expect = 7e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || || ||||| | ||| |||||| |||||||||||||||| || ||||| Sbjct 2502248 AGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 2502307 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| | ||| || || |||||||||| ||| ||||||||| ||||| ||||| Sbjct 2502308 CCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGAATGCCCTCT 2502367 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||| ||||| || || || | || || ||||| | || || || |||||| Sbjct 2502368 TTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTG 2502427 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| |||| ||||| || || |||||||| || Sbjct 2502428 ATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 2502468 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || || ||||| | ||| |||||| || ||||||||||||| ||| ||||| Sbjct 2502020 AGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGT 2502079 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || || |||||||||| ||| || |||||| ||||||||||| Sbjct 2502080 CCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATACCCTCT 2502139 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||| ||||| || || || | || || ||||| | || || || || ||| Sbjct 2502140 TTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 2502199 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| |||| ||||| || || |||||||| Sbjct 2502200 ATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || ||||| | ||| || ||||||||||||||||||| | Sbjct 2501555 CCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 2501614 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || || || || || |||||||||| ||| || |||||| ||| Sbjct 2501615 AGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2501674 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || ||||| ||||| || || ||| | || || ||||| | || || Sbjct 2501675 ATGCCCTCTTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 2501734 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || |||||||| |||| ||||| || || |||||||| Sbjct 2501735 TCCAGGGTAATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || || ||||| | ||| |||||| || ||||||||||||| || ||||| Sbjct 2501792 AGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGT 2501851 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || || |||||||||| ||| || |||||| ||||| ||||| Sbjct 2501852 CCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCT 2501911 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||| ||||| || || || | || || ||||| | || || || || ||| Sbjct 2501912 TTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 2501971 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| |||| ||||| || || |||||||| Sbjct 2501972 ATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 >seq82245 Length=399 Score = 123 bits (136), Expect = 5e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || ||||| || | ||| || || |||||||||||||| | || ||||| Sbjct 319 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 260 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || || ||||||| | || |||||| ||||| || ||| Sbjct 259 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 200 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | || || ||||| | || || || || ||| Sbjct 199 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 140 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || | ||||| ||||| |||||||| Sbjct 139 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq241 Length=1227248 Score = 123 bits (136), Expect = 5e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || ||||| || | ||| || || |||||||||||||||| || ||||| Sbjct 301336 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGA 301277 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || || ||||||| | || |||||| ||||| || || Sbjct 301276 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 301217 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | || || ||||| | || || || || ||| Sbjct 301216 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 301157 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || | ||||| ||||| |||||||| Sbjct 301156 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 Score = 116 bits (128), Expect = 8e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || ||||| || | ||| || || |||||||||||||| | || ||||| Sbjct 301108 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 301049 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || || ||||||| | || |||||| ||||| || || Sbjct 301048 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 300989 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || || | || || ||||| | || || || || ||| Sbjct 300988 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTG 300929 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || | ||||| ||||| ||||||||| Sbjct 300928 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 300890 >seq155987 Length=309 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || ||||| || | ||| || || |||||||||||||| | || ||||| Sbjct 60 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 119 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || || ||||||| | || |||||| ||||| || || Sbjct 120 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 179 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | || || ||||| | || || || || ||| Sbjct 180 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 239 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || | ||||| ||||| |||||||| Sbjct 240 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 >seq28 Length=4902010 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1107972 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 1107914 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1106200 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1106258 >seq229 Length=1300163 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 638693 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 638751 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 639235 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 639293 >seq58 Length=3746050 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1613479 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1613537 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1613862 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1613920 >seq82 Length=3025126 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| ||||||||||||||||| || |||||||||| |||||||||| || Sbjct 1212167 TTAGTATAGTGGTAAGTATCCCTGCCTGTCATGCGGGAGACCGGGATTCAATTCCCTGA 1212109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1042936842004772