Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq82245 147 2e-30 seq155987 143 2e-29 seq241 138 8e-28 seq30 116 3e-21 seq202961 100 2e-16 >seq82245 Length=399 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 332 CATGCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 273 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || || ||||||| | |||||| || | Sbjct 272 GGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGG 213 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| ||||| |||| | ||||||||| | | Sbjct 212 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCGCTTGGCT 154 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || |||||||||||||||||||| |||||| Sbjct 153 CAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 101 >seq155987 Length=309 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 47 CATGCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 106 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || || ||||||| | |||||| || | Sbjct 107 GGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGG 166 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||| || ||| ||||| |||| | |||| | ||||||||| | | Sbjct 167 AGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTTGGCT 225 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || |||||||||||||||||||| |||||| Sbjct 226 CAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 278 >seq241 Length=1227248 Score = 138 bits (152), Expect = 8e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || || || | || ||||||||| || ||| |||||| ||||||||||| || | Sbjct 301346 TCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 301287 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| | || ||||||||||| || || ||||||| | |||||| || | ||| Sbjct 301286 TAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 301227 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | ||||| || ||| ||||| ||||| |||| | ||||||||| | || | Sbjct 301226 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCGCTTGGCTCAA 301168 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| | || || ||||| || |||||||||||||||||||| |||||| Sbjct 301167 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 301118 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 301121 CATGCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 301062 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || || ||||||| | |||||| || | Sbjct 301061 GGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGG 301002 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || ||| ||||| ||| | | | |||||||| | || Sbjct 301001 AGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTC 300942 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || |||||||||||||||||||| ||||| Sbjct 300941 AACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 300891 >seq30 Length=4849498 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||| | || | || || || || || ||| |||||||||||||||||| || | Sbjct 2501555 CCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 2501614 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || |||||||||| ||||||||| || | || Sbjct 2501615 AGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 2501674 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || || || || ||||| || | | |||| | |||||||| || ||||| Sbjct 2501675 ATGCCCTCTTTATCTTGAATCTT-GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 2501733 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| ||||| || || || |||||||| ||||| ||||| Sbjct 2501734 CTCCAGGGTAATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || || || || || ||| || || || |||||||| || Sbjct 2501779 CATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTC 2501838 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| ||||||||| || | Sbjct 2501839 AGAGAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 2501898 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || || || || ||||| ||| | | | |||||||| || || Sbjct 2501899 TGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 2501958 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || || |||||||| ||||| ||||| Sbjct 2501959 CACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || || || || || ||| || || || |||||||| || Sbjct 2502007 CATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTC 2502066 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||||| ||||||||| || | Sbjct 2502067 AGAAAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 2502126 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| || || || ||||| ||| | | | |||||||| || || Sbjct 2502127 TGGAATACCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 2502186 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || || |||||||| ||||| ||||| Sbjct 2502187 CACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || || || || || ||| || || ||||||||||| || Sbjct 2502235 CATACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTC 2502294 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || |||| ||||| || |||||||||| |||||| || || | Sbjct 2502295 AGAGAGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGG 2502354 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || || || || ||||| ||| | | | |||||||| || || Sbjct 2502355 TGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 2502414 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || || |||||||| ||||| ||||| Sbjct 2502415 CACCTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502465 >seq202961 Length=268 Score = 100 bits (110), Expect = 2e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| || || ||||||| | |||||| || | ||| | ||||| || Sbjct 256 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTG 197 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| ||||| |||| | ||||||||| | || ||||| | || || Sbjct 196 TCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGAT 138 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||||||||||||||||||| |||||| Sbjct 137 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358746497946606