Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq472 181 2e-40 seq99 156 6e-33 seq18 87.8 3e-12 >seq472 Length=505873 Score = 181 bits (200), Expect = 2e-40 Identities = 187/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||||| || | ||||||||| || |||||||| ||| || ||||| Sbjct 212494 TCACCGATGAGAATGAGCCGCGAGGTCTGGAAGAGCCGCTCGTCATCCCAGTCCGGATGC 212553 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| || || ||||| || | ||||||||||| |||||||| || || |||||| Sbjct 212554 TCCTGTTTGAGTACGTCGCAGACGCGGTTGTGTTCCCGAAGCCAGATTGTCGCATACATC 212613 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || ||||| ||||| ||||| ||||| ||||| | || | || ||| Sbjct 212614 ATGAGGCCGGGGACCAGACCAAAGGCCTCATGACCTACAGCAAAGCGATGGGACTCTGGC 212673 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | |||||||||| ||||| |||||||||||| |||| | ||| || |||| ||| Sbjct 212674 ACATGGGGAGGATAGTGCATGTCCACCTGGACGTCACTGACTGTGGGAGGGTACACCTCA 212733 Query 9472 CCGTC 9476 || || Sbjct 212734 CCATC 212738 Score = 179 bits (198), Expect = 5e-40 Identities = 216/293 (74%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 8297 GCCAACGGACA---CCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTG 8353 |||| ||||| |||||||||||| | ||||| || ||| | || ||| | ||| Sbjct 210064 GCCACAGGACAAGGCCCCTTGACGTTATTGCAGACCAGCCTCTGCAGAGAGGCGGTGTTG 210123 Query 8354 ACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAG 8413 ||||| |||| || || | ||||| ||||||||||||||||||||| | ||||||||| Sbjct 210124 ACGATGTCGAAGCCAACTTTCCCGCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAG 210183 Query 8414 ATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCA 8473 ||| ||| |||| || ||||| || ||| | ||||| |||| || | ||| | || Sbjct 210184 ATGGGGTTTCCCATAAGACCTTTCAGCGAGTATGGAGCACCCATTTCCACCATGGTTTCT 210243 Query 8474 CCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCC 8533 || ||||||||||| | |||||||| || || | | |||||||| || ||||| || Sbjct 210244 CCAAAGATGGCGTTCGTCCGGGGCTTCTCAACGAGCAGGCCGGTGTAGAGTTCCACGGCG 210303 Query 8534 TCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || |||||||| | || || || || || |||||||| || ||||| Sbjct 210304 TCAACATCTCCGTACATCTCCTCCAGCTCTGCCGCCATCTCCTTCTCACCTGT 210356 >seq99 Length=2640589 Score = 156 bits (172), Expect = 6e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 ||||| |||||||| | || ||||| | || || || ||||||||| |||||||| | Sbjct 730909 GCGCTGTTGACGATGTCAAATCCCACTTTCCCACCAAAAGTGCTGGGCATCCAGTACTCA 730968 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 |||||||||||| |||| |||| |||||||| ||||| || || || |||| ||| | Sbjct 730969 GGGGAGCAGATGGGGTTCCCCATCAGGCCTTTCAGGGAAAAGGGGGCGCCCATCTCCACC 731028 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 ||| |||| || || | ||||||||| | |||||| ||||||| | || | ||| ||| Sbjct 731029 ATGGTCTCTCCAAACACGGCGTTGGGCCTGGGCTTCTCCACCAGCAGCCCAGAGTAGAGC 731088 Query 8525 TCCACAGCCTCGACGTCTCCGTAAAG 8550 ||||| | || | ||||||||| || Sbjct 731089 TCCACGGATTCTATGTCTCCGTACAG 731114 Score = 149 bits (164), Expect = 9e-31 Identities = 182/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||||| || ||||||||||| | ||||||| ||| ||||| || Sbjct 733359 TCACCGATCAGAATGAGCCGCGTGGTCTGGAAGATGCGCTCGTCGTCCCAGTCTGGGTGC 733418 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | |||| || || || || | |||||| ||||| ||||||| |||||||||||| Sbjct 733419 TCCCGCTTCATCACGTCACAGACACGGTTGTGCTCCCTCAGCCAGAGCGTGGCGTACATC 733478 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTT-TTCGGG 9410 ||||| ||||| |||||||| || || || ||||| ||||| | || |||| || || Sbjct 733479 ATGAGGCCAGGAACCAGGCCGAACGCTTCGTGACCCACAGCAAAGCG-GTGTTCCTCCGG 733537 Query 9411 CACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTC 9470 | | ||||| || ||||| |||||| || ||||| ||| |||||| |||| || Sbjct 733538 GGCATGAGGAGGGTAATGCATGTCCACCTGAACATCTTTCACCAGGGGGGGGTACACCTC 733597 Query 9471 ACCGTC 9476 ||||| Sbjct 733598 GCCGTC 733603 >seq18 Length=5708454 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||| || |||| || ||||| |||||||||||||| | ||| || || ||| Sbjct 3244753 CCTATAATAATAAGTCTGGTTGTCTGAAACAGTTGCTCGTCTCCCCAGGTAGGGTGCTCT 3244812 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | ||||| | || || |||| |||||| || | ||||| | ||||||||||| | Sbjct 3244813 TTCTTCAGGATGTCACAAACCCGGTTGTGCTCGCGCAGCCACAAGGTGGCGTACATACTT 3244872 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAG 9395 | || || | ||||||||| |||| || || | ||||| Sbjct 3244873 AATCCTGGCAGCAGGCCAAACACCTCCTGGCCAATGGCCAG 3244913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714336206542720