Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq155987 147 5e-30 seq30 145 2e-29 seq241 143 6e-29 seq202961 129 1e-24 seq49 87.8 4e-12 >seq155987 Length=309 Score = 147 bits (162), Expect = 5e-30 Identities = 166/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || ||||| || || || |||||||| ||||| || |||| Sbjct 274 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 218 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| |||||||| || ||||| |||||||||||||| || ||||| |||||| Sbjct 217 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 158 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 157 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 98 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || || || || | ||||| Sbjct 97 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAG 57 >seq30 Length=4849498 Score = 145 bits (160), Expect = 2e-29 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || || ||||| |||||||| || ||| Sbjct 2501778 CAGATCTTTGTGAAGACGCTGACTGGTAAGACCATTACCCTGGAGGTGGA--GCCCAGTG 2501721 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| |||||||| || ||||| || || || || ||||||| Sbjct 2501720 ACACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCAGC 2501661 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| |||||||| | || ||| | || || ||| Sbjct 2501660 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTTTCTGACTACAACA 2501601 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||||| || || || || ||||||||| || | ||| Sbjct 2501600 TCCAAAAGGAGTCCACCCTCCATCTTGTTCTGCGTCTC 2501563 >seq241 Length=1227248 Score = 143 bits (158), Expect = 6e-29 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| ||||| || || || Sbjct 300894 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGA--GCCAAGTG 300951 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||||| Sbjct 300952 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAGC 301011 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 301012 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAACA 301071 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || || || || | ||||| Sbjct 301072 TCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAG 301111 Score = 143 bits (158), Expect = 6e-29 Identities = 165/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || ||||| || || || |||||||| ||||| || |||| Sbjct 301122 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 301178 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| |||||||| || ||||| |||||||||||||| || ||||| |||||| Sbjct 301179 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 301238 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 301239 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTACAAC 301298 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || || || || | ||||| Sbjct 301299 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAG 301339 >seq202961 Length=268 Score = 129 bits (142), Expect = 1e-24 Identities = 124/158 (78%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || ||||| || || || |||||||| ||||| || |||| Sbjct 105 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 161 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| |||||||| || ||||| |||||||||||||| || ||||| |||||| Sbjct 162 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 221 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | || |||||||| || || ||||| |||||||| Sbjct 222 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGG 259 >seq49 Length=4080560 Score = 87.8 bits (96), Expect = 4e-12 Identities = 88/112 (79%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||||||||| | || || ||||| |||||||| ||||||| Sbjct 1698896 AAAATGC---AGATCTTCGTGAAAACGTTGACCGGGAAAACCATCACCCTTGAGGTGG-- 1698950 Query 177975 AGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||| || |||||||||||||| || || |||||||||||||| ||||| Sbjct 1698951 AGCCCAGCGACACCATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGG 1699002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199358556888492