Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhamphochromis_20esox_20[genbank_20GCA_5F000150935.1_202008-07-09] 55,751 sequences; 71,295,074 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq55385 181 2e-41 seq43163 161 2e-35 >seq55385 Length=3120 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | |||||| |||||||||||||| ||||||||||| ||||| Sbjct 2029 CGCTAAGCGTCACCGGAAAGTTCTTCGTGATAACATCCAAGGTATCACCAAGCCCGCTAT 2088 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || || |||||| | || || | |||| || |||| Sbjct 2089 CCGCCGTCTGGCCCGCCGTGGCGGTGTGAAGCGTATTTCCGGTCTAATCTACGAGGAGAC 2148 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| ||| ||| |||| ||| ||| | ||| || || Sbjct 2149 CCGTGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGTGACGCTGTTACCTACACTGA 2208 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 2209 GCACGCGAAGAGGAAGACTGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 2268 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| ||| ||||| Sbjct 2269 TCGCACTCTGTATGGTTTCGGAGGTTAA 2296 >seq43163 Length=1361 Score = 161 bits (178), Expect = 2e-35 Identities = 200/274 (73%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || |||||||| || || || Sbjct 562 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAACCGGCCAT 621 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 622 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 681 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || || ||| ||| |||| || || || ||| || || Sbjct 682 CCGCGGTGTGCTCAAGGTGTTTCTGGAGAACGTCATCCGCGACGCCGTCACCTACACTGA 741 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 742 GCACGCTAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 801 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || || ||||| || || Sbjct 802 CCGCACTCTGTACGGCTTCGGCGGTTAAACTCCT 835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79024226470443