Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq15 89.7 5e-13 seq14 87.8 2e-12 seq6 86.0 6e-12 >seq15 Length=103963436 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 ||||||||||| ||||| || | || || || || || |||||||| |||||||| || Sbjct 25932292 ACACCCATTCTCTGGTACTCCCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCCTCCAGT 25932233 Query 16724 GATATATTCTCCATGAAATCAAAAGGATT 16752 || || ||||||||||| ||||||||||| Sbjct 25932232 GAGATGTTCTCCATGAAGTCAAAAGGATT 25932204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || || || ||||| ||||||||||| || ||||| ||||||||||||| Sbjct 25930294 GGTCTTTGATGTAGGTGTCAATGAGCAGGCTGTACATCTCAGAGTGGATGTTCTCCATGG 25930235 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | || || || || || ||||||| ||||||| | || |||||| Sbjct 25930234 CGATTTGGAAACCATAGAAGCATCTTGCTTCCGTCACCTGGACTTCC 25930188 >seq14 Length=93901823 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || | || | ||| |||||| |||| |||| Sbjct 93502008 CCTCGTCTCTGCTGATGAGCTCGTTGGAGTAGGTGAGCCCAGGCATCAGGCCTCTCTTCT 93501949 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | |||||| | || || || |||||||| || ||||| || ||||| || | || |||| Sbjct 93501948 TCAACCAATAAATAGCTGCAAACGACCCCGAGAAGAAGATGCCCTCCACTGCAGCGAACG 93501889 Query 17106 C 17106 | Sbjct 93501888 C 93501888 >seq6 Length=87043187 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || || || ||||| ||||||||||| || ||||| ||||||||||||| Sbjct 51007611 GGTCTTTGATGTAGGTGTCAATGAGCAGGCTGTACATCTCAGAGTGGATGTTCTCCATGG 51007552 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | ||||| || || || ||||||| ||||| | | || |||||| Sbjct 51007551 CGATCTGGAAACCATAGAAGCATCTTGCTTCTGTCACCTGGACTTCC 51007505 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || || || | || ||||| || | |||| Sbjct 51008541 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCT 51008482 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||| ||| || || || || || || ||||||||||| || ||||| || | |||||| | Sbjct 51008481 TTAGCCAGAAAATGGCAGCAAAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAGG 51008422 Query 17106 C 17106 | Sbjct 51008421 C 51008421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516043715015400