Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq29 185 1e-41 seq19 145 9e-30 >seq29 Length=42488238 Score = 185 bits (204), Expect = 1e-41 Identities = 147/177 (83%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || |||| |||||||| ||||||||| || |||| ||||||||| |||||||| Sbjct 12016579 CTTGAGTCCTGTGATGTGGGCGATCATGTAGGTGAGGAGGGCGTAGCTGGCGATGTTGAA 12016520 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 |||||| |||| |||||||||||||||||||||||||||||||| || | |||||| | Sbjct 12016519 GGGCACTCCCAAGCCCATGTCCCCCGAGCGCTGGTACAGCTGGCACGACAACTCCCCATC 12016460 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 || ||||||||||||||| |||||||| ||||| ||||| ||||||||| Sbjct 12016459 AATGACATAGAACTGGCACAGGGCATGGCAGGGGGGCAGCACCATGTGGGGCAGGTC 12016403 >seq19 Length=82978132 Score = 145 bits (160), Expect = 9e-30 Identities = 130/162 (80%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 || || |||| |||||||| ||||||||| || | || ||||||||| |||||||||||| Sbjct 29462964 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGATGGCGTAGCTGGCGATGTTGAAGGGC 29462905 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||| | |||||||||||||||| ||| ||||||||||| | |||| |||| | Sbjct 29462904 ACTCCCTGGCCCATGTCCCCCGAGCACTGATACAGCTGGCACGGCAGCTTCCCGTCAATT 29462845 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCA-GGGCGGCAGGGCCAT 145910 ||||| ||||| |||||| ||||| ||| || || ||||| Sbjct 29462844 ACGTACAACTGACACAGGGCATGGCAGGGGGGGAAGCGCCAT 29462803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588364434006200