Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq11 113 4e-20 seq4 104 2e-17 seq23 93.3 4e-14 seq13 89.7 4e-13 >seq1 Length=159038749 Score = 125 bits (138), Expect = 6e-24 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||| | ||| | ||||||||||| || ||||| ||||| | || Sbjct 137746619 CCCCTC--AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA 137746562 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| ||||| ||| | || || | ||||||||| ||| | Sbjct 137746561 GGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGGA 137746502 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| || || | ||| || |||| |||||| | Sbjct 137746501 TGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCT 137746442 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 | | ||| |||||||| || |||| || || ||||| || ||||| |||| Sbjct 137746441 CAAGGGTGATGGTCTTACCAGTTAGGGTCTTCACAAAGATCTGCATCTTGA 137746391 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||| | ||| | ||||||||||| || ||||| ||||| | || Sbjct 137746847 CCCCTC--AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA 137746790 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| ||||| ||| | || || | ||||||||| ||| | Sbjct 137746789 GGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGGA 137746730 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| || || | ||| || |||| |||||| | Sbjct 137746729 TGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCT 137746670 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | ||| |||||||| || || | ||||| || || || ||||| Sbjct 137746669 CAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746624 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | || |||| ||| | ||||||||||| || ||||| ||||| Sbjct 137747082 GTTGCCTCCACGAAGACGCAGGACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 137747023 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| || | || |||||||| || || ||| | || || | ||||||||| Sbjct 137747022 GGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGG 137746963 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||| |||||||| |||||| || || | ||| || |||| |||||| Sbjct 137746962 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTC 137746903 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | ||||| || || || ||||| Sbjct 137746902 AACCTCAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746852 >seq11 Length=93888508 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||| | ||| | ||||||||||| || ||||| ||||| | | Sbjct 55250358 CCCCTC--AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGA 55250415 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || | | || |||||||| ||||| || | || || | ||||||||| ||| | Sbjct 55250416 GCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGA 55250475 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| || || | ||| || |||| ||||||| | Sbjct 55250476 TGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCT 55250535 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | ||| |||||||||||||| | || || ||||| || ||||| Sbjct 55250536 CTAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 55250581 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | || |||| ||| | |||||||||||| || ||||| ||||| Sbjct 55249895 GTTGCCACCACGGAGACGCAGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTC 55249954 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || || | | || |||||||| ||||| || | || || | ||||||||| Sbjct 55249955 GGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGG 55250014 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||| |||||||| |||||| || || | ||| || |||| ||||| Sbjct 55250015 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTCGGCTC 55250074 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || | || || || || || ||||| Sbjct 55250075 AACCTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250125 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||| | ||| | |||||||||||||| ||||| ||||| | | Sbjct 55250130 CCCCTC--AGACGGAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGA 55250187 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || | | || |||||||| ||||| || | || || | ||||||||| ||| | Sbjct 55250188 GCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGA 55250247 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| || || | ||| || || | ||||| | Sbjct 55250248 TGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTCGGCTCAACCT 55250307 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||| || || | || || || || || ||||| Sbjct 55250308 CCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||| | ||| | ||||||||||| || ||||| ||||| | | Sbjct 55250586 CCCCTC--AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGA 55250643 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || | | || |||||||| ||||| || | || || | |||||||| || | Sbjct 55250644 GAGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGA 55250703 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| || || | ||| || |||| |||||| | Sbjct 55250704 TGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCT 55250763 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 | | ||| |||||||| ||||| | || || || || || ||||| |||| Sbjct 55250764 CTAGGGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAGATCTGCATCTTGA 55250814 >seq4 Length=82398023 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | |||||||| || || ||||| ||||| | ||||| || |||| Sbjct 51880820 AGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 51880761 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | || || | ||||||||| ||| | ||| |||||||| Sbjct 51880760 TCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 51880701 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| ||||||| || | ||| |||||| Sbjct 51880700 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 51880641 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | || || || || || ||||| || Sbjct 51880640 TTGCCTGTGAGGGTCTTCACGAAGATCTGCATCTT 51880606 >seq23 Length=49854004 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | |||||||| || || ||||||||||| | || ||| | | ||| Sbjct 40744177 AGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCTGACAAGGTGCGACCATCC 40744118 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| || | || || | |||||| || || | ||||||||| || Sbjct 40744117 TCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 40744058 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | |||||| | |||||| || | ||| || || Sbjct 40744057 TGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATTGTT 40743998 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || || ||||| || || ||||| ||||| ||| Sbjct 40743997 TTCCCCGTCAACGTCTTCACGAATATCTGCATCTTG 40743962 >seq13 Length=107758822 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| || || || ||||| ||||| | ||||| || | || Sbjct 72692180 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCT 72692239 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | ||| |||||||| Sbjct 72692240 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 72692299 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | ||||| || | ||| |||||| Sbjct 72692300 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTC 72692359 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || ||||| || || ||||| Sbjct 72692360 TTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692391 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| || || || ||||| ||||| | ||||| || | || Sbjct 72692636 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCT 72692695 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | ||| |||||||| Sbjct 72692696 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 72692755 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | ||||| || | ||| |||||| Sbjct 72692756 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTC 72692815 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || ||||| || || ||||| Sbjct 72692816 TTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692847 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| || || || ||||| || || | ||||| || | || Sbjct 72692408 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGAGAGGGTGCGGCCATCT 72692467 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | ||| |||||||| Sbjct 72692468 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 72692527 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | ||||| || | ||| |||||| Sbjct 72692528 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTC 72692587 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || ||||| || || ||||| Sbjct 72692588 TTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692619 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| || || || ||||| ||||| | ||||| || | || Sbjct 72692864 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCT 72692923 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | ||| |||||||| Sbjct 72692924 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 72692983 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | ||||| || | ||| |||||| Sbjct 72692984 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTC 72693043 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | || || || || || ||||| || Sbjct 72693044 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATCTT 72693078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421064464437980