Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 seq15 93.3 4e-14 >seq6 Length=87043187 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | |||||| || || || || |||||||| || || | || || Sbjct 51008539 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCTTT 51008480 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || || ||||| || ||||||||||| || || ||||| || ||||| ||| Sbjct 51008479 AGCCAGAAAATGGCAGCAAAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAGGCA 51008420 Query 16379 ACCAATCGCTCACC 16392 |||| |||||||| Sbjct 51008419 ACCACACGCTCACC 51008406 >seq15 Length=103963436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||| ||||| || || || || ||||| || || | || || Sbjct 25930907 TCGTCTCTGCTGATGAGCTCATTTGAGAAGGTCAGGCCAGGCATGAGCCCCCTCTTCTTC 25930848 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || || ||||| || ||||| ||||| || || ||||| || ||||||||| Sbjct 25930847 AGCCAGAAAATGGCAGCAAAGGACCCAGAGAAGAAGATCCCCTCAACAGCCGCAAATGCA 25930788 Query 16379 ACCAATCGCTCACC 16392 |||| |||||||| Sbjct 25930787 ACCACACGCTCACC 25930774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461169819083000