Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq23 86.0 5e-12 >seq23 Length=49854004 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || || || || || || ||||| || ||| | || || || | ||| Sbjct 40743966 ATGCAGATATTCGTGAAGACGTTGACGGGGAAAACAATCACCCTTGAGGTTGAGCCCAGC 40744025 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| |||| || || | || |||||| | || ||| ||| Sbjct 40744026 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 40744085 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | || ||||||||||| || ||| || || || || | | Sbjct 40744086 CAGCGTCTGATCTTCGCTGGCAAACAACTTGAGGATGGTCGCACCTTGTCAGACTATAAC 40744145 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| |||| |||||| | ||| | || | || ||||| Sbjct 40744146 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGTCTTCGTGGAGG 40744192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417120455237600