Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq29 111 1e-19 seq19 109 5e-19 >seq29 Length=42488238 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| ||||||| || || ||||||||||||||||||||||| || || Sbjct 12016575 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 12016516 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || | ||||||||| | || | ||||||||||||||| |||| |||||| | Sbjct 12016515 ACTCCCAAGCCCATGTCCCCCGAGCGCTGGTACAGCTGGCACGACAACTCCCCATCAATG 12016456 Query 21111 ACGTAAAACTGACACA 21126 || || ||||| |||| Sbjct 12016455 ACATAGAACTGGCACA 12016440 >seq19 Length=82978132 Score = 109 bits (120), Expect = 5e-19 Identities = 122/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| ||||||| || || |||| |||||||||||||||||| || || Sbjct 29462964 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGATGGCGTAGCTGGCGATGTTGAAGGGC 29462905 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || |||||||||| | || | ||| ||||||||||| | ||||| ||| | Sbjct 29462904 ACTCCCTGGCCCATGTCCCCCGAGCACTGATACAGCTGGCACGGCAGCTTCCCGTCAATT 29462845 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGG-AGAGCCAT 21151 ||||| |||||||||| | || || || ||| || ||||| Sbjct 29462844 ACGTACAACTGACACAGGGCATGGCAGGGGGGGAAGCGCCAT 29462803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426565655264400